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DataSpaceR is an R interface to the CAVD DataSpace, a data sharing and discovery tool that facilitates exploration of HIV immunological data from pre-clinical and clinical HIV vaccine studies.

DataSpace provides data for several immunoassays from several studies:

  • ADCP
  • Binding Antibody Multiplex Assay (BAMA)
  • Subject Demographics
  • Fc Array
  • IFNg Elispot
  • Intracellular Cytokine Staining (ICS)
  • Microarray Data
  • Monoclonal Antibody Pharmacokinetics
  • NAB non-standard data
  • Neutralizing Antibody Assay (NAb)
  • Neutralizing Monoclonal Antibody Assay
  • Treatment assignments
  • Viral load

This package is intended for use by immunologists, bioinformaticians, and statisticians in HIV vaccine research, or anyone interested in the analysis of HIV immunological data across assays, studies, and time.

This package simplifies access to the database by taking advantage of the standardization of the database to hide all the Rlabkey specific code away from the user, and it allows the users to access the study-specific datasets via an object-oriented paradigm.