Plot metrics calculation outputs

S3 methods for plotting metrics calculated from the output sof either incidence(), growth_rate(), Rt(), or proportion().

Usage

# S3 method for class 'incidence'
plot(x, xlab = "Time", ...)

# S3 method for class 'growth_rate'
plot(x, xlab = "Time", ...)

# S3 method for class 'Rt'
plot(x, xlab = "Time", ...)

# S3 method for class 'proportion'
plot(x, xlab = "Time", ...)

Arguments

x

Metrics calculation output of class EpiStrainDynamics.metric

xlab

Time label for x axis, defaults to "Time"

...

Additional arguments passed to plot

Value

ggplot2 plot output

Examples

if (FALSE) { # interactive()
mod <- construct_model(
  pathogen_structure = single(
    case_timeseries = sarscov2$cases,
    time = sarscov2$date
  ),
  method = random_walk()
)

fit <- fit_model(mod)
gr <- growth_rate(mod)
plot(gr)
}