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Sets the SymbiotaR2_url option for you, optionally, by appending it to your .Rprofile. Checks whether you've specified a valid URL that can be reached, and attempts to pull a resource from the API, to confirm that the URL does specify a Symbiota2 portal.

Usage

SymbiotaR2_setup(url, append = FALSE, verbose = TRUE)

Arguments

url

URL of Symbiota2 portal (a trailing / will be appended, if it is not given)

append

logical of whether to attempt to append this to your .Rprofile file, making this your default every time you start up R

verbose

logical of whether or not to display output

Value

Invisbly, the URL that has been stored

Author

Will Pearse

Examples

if (FALSE) {
# An example (that doesn't work because it's not a real portal)
SymbiotaR2_setup("http://nonexistent-portal.com/api/")
# Trying to save a non-existence portal
SymbiotaR2_setup("http://nonexistent-portal.com/api/", TRUE)
}