Run BEAST2 — run_beast2_from_options • beastier

Run BEAST2

Usage

run_beast2_from_options(beast2_options = create_beast2_options())

Arguments

beast2_options: a set of BEAST2 options, that are the R equivalent of the BEAST2 command-line options, as can be created by create_beast2_options

Value

The text sent to STDOUT and STDERR. It will create the file with name output_state_filenames

Author

Richèl J.C. Bilderbeek

Examples

check_empty_beaustier_folders()

if (is_beast2_installed() && beautier::is_on_ci()) {
  beast2_options <- create_beast2_options(
    input_filename = get_beastier_path("2_4.xml")
  )
  run_beast2_from_options(beast2_options)
  file.remove(beast2_options$output_state_filename)
  remove_beaustier_folders()
}
check_empty_beaustier_folders()