A summary statistics of specific CDS features is returned.
Arguments
- file
file path to a CDS file in
fasta
format.- organism
character string specifying the organism at hand.
Details
The summary statistics include:
total_seqs
:nnn_abs
: The total number of NNN's (over all chromosomes/scaffolds/contigs) in all coding sequences combinednnn_perc
: The percentage (relative frequency) of NNN's (over all chromosomes/scaffolds/contigs) compared to the total number of nucleotides of all coding sequences