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A summary statistics of specific CDS features is returned.

Usage

summary_cds(file, organism)

Arguments

file

file path to a CDS file in fasta format.

organism

character string specifying the organism at hand.

Details

The summary statistics include:

  • total_seqs:

  • nnn_abs: The total number of NNN's (over all chromosomes/scaffolds/contigs) in all coding sequences combined

  • nnn_perc: The percentage (relative frequency) of NNN's (over all chromosomes/scaffolds/contigs) compared to the total number of nucleotides of all coding sequences

Author

Hajk-Georg Drost