The /germplasm/{germplasmDbId}/pedigree endpoint this function
originally called was deprecated in BrAPI v2.1. It now queries
/pedigree?germplasmDbId= instead, which returns a richer record.
Arguments
- con
A
brapi_connection()object.- germplasmDbId
Character. The unique germplasm identifier.
Value
A single-row tibble of the germplasm's pedigree node, with
parents, siblings and progeny as list-columns of tidy tibbles.
See brapi_pedigree(), which this function calls.
BrAPI endpoint
GET /pedigree - see the
v2.1 specification.
Query parameters the specification defines, which may be passed
through ...:
accessionNumber, collection, familyCode, binomialName, genus,
species, synonym, includeParents, includeSiblings,
includeProgeny, includeFullTree, pedigreeDepth, progenyDepth.
Examples
# \donttest{
con <- brapi_connection("https://test-server.brapi.org")
brapi_germplasm_pedigree(con, "germplasm1")
#> # A tibble: 1 × 15
#> additionalInfo externalReferences breedingMethodDbId breedingMethodName
#> <lgl> <lgl> <chr> <chr>
#> 1 NA NA breeding_method1 Male Backcross
#> # ℹ 11 more variables: crossingProjectDbId <chr>, crossingYear <int>,
#> # defaultDisplayName <chr>, familyCode <chr>, germplasmDbId <chr>,
#> # germplasmName <chr>, germplasmPUI <chr>, parents <list>,
#> # pedigreeString <chr>, progeny <list>, siblings <list>
# }