Retrieves the ontologies registered on the server: metadata about each
ontology (name, version, authors, description, ...), not the trait
terms that belong to it. brapi_traits(), brapi_scales(),
brapi_methods(), and brapi_observation_variables() each carry an
ontology reference back to one of these records.
Arguments
- con
A
brapi_connection()object.- ...
Additional query parameters.
BrAPI endpoint
GET /ontologies - see the
v2.1 specification.
Query parameters the specification defines, which may be passed
through ...:
ontologyName.
See also
brapi_ontology() for a single ontology by ID;
brapi_traits(), brapi_scales(), brapi_methods(), and
brapi_observation_variables() for the records that reference these
ontologies.
Examples
# \donttest{
con <- brapi_connection("https://test-server.brapi.org")
brapi_ontologies(con)
#> # A tibble: 199 × 10
#> additionalInfo externalReferences authors copyright description
#> <list> <lgl> <chr> <chr> <chr>
#> 1 <NULL> NA NA NA NA
#> 2 <NULL> NA NA NA NA
#> 3 <NULL> NA NA NA NA
#> 4 <NULL> NA NA NA NA
#> 5 <NULL> NA NA NA NA
#> 6 <NULL> NA NA NA NA
#> 7 <named list [1]> NA Bob 2017 brapi.org Ontology.org
#> 8 <named list [1]> NA Bob 2017 brapi.org Custom Maize Onto…
#> 9 <named list [1]> NA Bob 2017 brapi.org Custom Pawpaw Ont…
#> 10 <NULL> NA NA NA NA
#> # ℹ 189 more rows
#> # ℹ 5 more variables: documentationURL <chr>, licence <chr>,
#> # ontologyName <chr>, version <chr>, ontologyDbId <chr>
# }