Function reference • coder

Classify data

Functions used for classifying data

categorize(): Categorize cases based on external data and classification scheme

classify(): Classify codified data

codify() print(<codified>): Codify case data with external code data (within specified time frames)

index(): Calculate index based on classification scheme

Classification schemes

Default classification schemes for comorbidity and adverse events

knee_ae hip_ae: Classcodes for adverse events after knee and hip arthroplasty

charlson: Classcodes for Charlson comorbidity based on ICD-codes

cps: Classcodes for the comorbidity-polypharmacy score (CPS) based on ICD-10 codes

elixhauser: Classcodes for Elixhauser based on ICD-codes

hip_ae_hailer: Classcodes for infection and dislocation after hip arthroplasty

rxriskv: Classcodes for RxRisk V based on ATC codes

Example data

ex_atc: Example data for random ATC codes

ex_icd10: Example data for random codes assigned to random people

ex_people: Example data for random people

Functions and methods for classcodes

Functions used for classifying data

all_classcodes(): Summary data for all default classcodes object in the package

as.data.frame(<classified>) as.data.table(<classified>) as.matrix(<classified>): Convert output from classify() to matrix/data.frame/data.table

as.classcodes() is.classcodes(): Classcodes methods

codebook() print(<codebook>) codebooks(): codebook(s) for classcodes object

print(<classcodes>): Print classcodes object

print(<classified>): Printing classified data

set_classcodes(): Set classcodes object

summary(<classcodes>) print(<summary.classcodes>): Summarizing a classcodes object

visualize(<classcodes>): Visualize classification scheme in web browser

Additional help functions

as.keyvalue(<classcodes>): Make keyvalue object from classcodes object