Create a mcbette report, to be used when reporting bugs
Source:R/mcbette_report.R
mcbette_report.RdCreate a mcbette report, to be used when reporting bugs
Usage
mcbette_report(beast2_folder = beastier::get_default_beast2_folder())Arguments
- beast2_folder
the folder where the BEAST2 is installed. Note that this is not the folder where the BEAST2 executable is installed: the BEAST2 executable is in a subfolder. Use get_default_beast2_folder to get the default BEAST2 folder. Use get_default_beast2_bin_path to get the full path to the default BEAST2 executable. Use get_default_beast2_jar_path to get the full path to the default BEAST2 jar file.
Examples
mcbette_report()
#> ***********
#> * mcbette *
#> ***********
#> Can run mcbette: FALSE
#> OS: unix
#> ****************
#> * Dependencies *
#> ****************
#> beautier version: 2.6.6
#> tracerer version: 2.2.2
#> beastier version: 2.4.12
#> mauricer version: 2.5.3
#> babette version: 2.3.2
#> **********
#> * BEAST2 *
#> **********
#> Java version: 11.0.18+10-post-Ubuntu-0ubuntu122.04
#> Is BEAST2 installed: FALSE
#> ****************
#> * session info *
#> ****************
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.3.0 (2023-04-21)
#> os Ubuntu 22.04.2 LTS
#> system x86_64, linux-gnu
#> ui X11
#> language en
#> collate C
#> ctype en_US.UTF-8
#> tz Etc/UTC
#> date 2023-05-12
#> pandoc 2.16.2 @ /usr/local/bin/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> ape 5.7-1 2023-03-13 [1] RSPM (R 4.3.0)
#> babette 2.3.2 2023-05-12 [1] https://ropensci.r-universe.dev (R 4.3.0)
#> beastier 2.4.12 2023-05-12 [1] https://ropensci.r-universe.dev (R 4.3.0)
#> beautier 2.6.6 2023-05-12 [1] https://ropensci.r-universe.dev (R 4.3.0)
#> bslib 0.4.2 2022-12-16 [1] RSPM (R 4.3.0)
#> cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0)
#> callr 3.7.3 2022-11-02 [1] RSPM (R 4.3.0)
#> cli 3.6.1 2023-03-23 [1] RSPM (R 4.3.0)
#> crayon 1.5.2 2022-09-29 [1] RSPM (R 4.3.0)
#> curl 5.0.0 2023-01-12 [1] RSPM (R 4.3.0)
#> desc 1.4.2 2022-09-08 [1] RSPM (R 4.3.0)
#> devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0)
#> digest 0.6.31 2022-12-11 [1] RSPM (R 4.3.0)
#> downlit 0.4.2 2022-07-05 [1] RSPM (R 4.3.0)
#> ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0)
#> evaluate 0.21 2023-05-05 [1] RSPM (R 4.3.0)
#> fansi 1.0.4 2023-01-22 [1] RSPM (R 4.3.0)
#> fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0)
#> fs 1.6.2 2023-04-25 [1] RSPM (R 4.3.0)
#> glue 1.6.2 2022-02-24 [1] RSPM (R 4.3.0)
#> htmltools 0.5.5 2023-03-23 [1] RSPM (R 4.3.0)
#> htmlwidgets 1.6.2 2023-03-17 [1] RSPM (R 4.3.0)
#> httpuv 1.6.11 2023-05-11 [1] CRAN (R 4.3.0)
#> httr 1.4.6 2023-05-08 [1] RSPM (R 4.3.0)
#> jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.3.0)
#> jsonlite 1.8.4 2022-12-06 [1] RSPM (R 4.3.0)
#> knitr 1.42 2023-01-25 [1] RSPM (R 4.3.0)
#> later 1.3.1 2023-05-02 [1] RSPM (R 4.3.0)
#> lattice 0.20-45 2021-09-22 [3] CRAN (R 4.2.0)
#> lifecycle 1.0.3 2022-10-07 [1] RSPM (R 4.3.0)
#> magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0)
#> mauricer 2.5.3 2023-05-12 [1] https://ropensci.r-universe.dev (R 4.3.0)
#> mcbette * 1.15.1 2023-05-12 [1] local (/tmp/Rtmp1b3KwW/mcbette-source)
#> memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0)
#> mime 0.12 2021-09-28 [1] RSPM (R 4.3.0)
#> miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0)
#> nlme 3.1-162 2023-01-31 [3] CRAN (R 4.2.2)
#> pillar 1.9.0 2023-03-22 [1] RSPM (R 4.3.0)
#> pkgbuild 1.4.0 2022-11-27 [1] RSPM (R 4.3.0)
#> pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.3.0)
#> pkgdown 2.0.7 2022-12-14 [1] RSPM (R 4.3.0)
#> pkgload 1.3.2 2022-11-16 [1] RSPM (R 4.3.0)
#> prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.3.0)
#> processx 3.8.1 2023-04-18 [1] RSPM (R 4.3.0)
#> profvis 0.3.8 2023-05-02 [1] RSPM (R 4.3.0)
#> promises 1.2.0.1 2021-02-11 [1] RSPM (R 4.3.0)
#> ps 1.7.5 2023-04-18 [1] RSPM (R 4.3.0)
#> purrr 1.0.1 2023-01-10 [1] RSPM (R 4.3.0)
#> R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0)
#> ragg 1.2.5 2023-01-12 [1] RSPM (R 4.3.0)
#> rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.3.0)
#> Rcpp 1.0.10 2023-01-22 [1] RSPM (R 4.3.0)
#> remotes 2.4.2 2021-11-30 [1] RSPM (R 4.3.0)
#> rJava 1.0-6 2021-12-10 [2] CRAN (R 4.1.2)
#> rlang 1.1.1 2023-04-28 [1] RSPM (R 4.3.0)
#> rmarkdown 2.21 2023-03-26 [1] RSPM (R 4.3.0)
#> rotemplate 2.0.0 2023-04-24 [1] Github (ropensci/[email protected])
#> rprojroot 2.0.3 2022-04-02 [1] RSPM (R 4.3.0)
#> rstudioapi 0.14 2022-08-22 [1] RSPM (R 4.3.0)
#> sass 0.4.6 2023-05-03 [1] RSPM (R 4.3.0)
#> sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0)
#> shiny 1.7.4 2022-12-15 [1] RSPM (R 4.3.0)
#> stringi 1.7.12 2023-01-11 [1] RSPM (R 4.3.0)
#> stringr 1.5.0 2022-12-02 [1] RSPM (R 4.3.0)
#> systemfonts 1.0.4 2022-02-11 [1] RSPM (R 4.3.0)
#> testit 0.13 2021-04-14 [1] RSPM (R 4.3.0)
#> textshaping 0.3.6 2021-10-13 [1] RSPM (R 4.3.0)
#> tibble 3.2.1 2023-03-20 [1] RSPM (R 4.3.0)
#> tracerer 2.2.2 2023-05-06 [1] https://ropensci.r-universe.dev (R 4.3.0)
#> urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.3.0)
#> usethis 2.1.6 2022-05-25 [1] RSPM (R 4.3.0)
#> utf8 1.2.3 2023-01-31 [1] RSPM (R 4.3.0)
#> vctrs 0.6.2 2023-04-19 [1] RSPM (R 4.3.0)
#> whisker 0.4.1 2022-12-05 [1] RSPM (R 4.3.0)
#> withr 2.5.0 2022-03-03 [1] RSPM (R 4.3.0)
#> xfun 0.39 2023-04-20 [1] RSPM (R 4.3.0)
#> xml2 1.3.4 2023-04-27 [1] RSPM (R 4.3.0)
#> xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0)
#> yaml 2.3.7 2023-01-23 [1] RSPM (R 4.3.0)
#>
#> [1] /usr/local/lib/R/site-library
#> [2] /usr/lib/R/site-library
#> [3] /usr/lib/R/library
#>
#> ──────────────────────────────────────────────────────────────────────────────