Set the mcbette state.Source:
Set the mcbette state to having BEAST2 installed with or without installing the BEAST2 NS package.
set_mcbette_state( mcbette_state, beast2_folder = beastier::get_default_beast2_folder(), verbose = FALSE )
the mcbette state, which is a list with the following elements:
the folder where the BEAST2 is installed. Note that this is not the folder where the BEAST2 executable is installed: the BEAST2 executable is in a subfolder. Use get_default_beast2_folder to get the default BEAST2 folder. Use get_default_beast2_bin_path to get the full path to the default BEAST2 executable. Use get_default_beast2_jar_path to get the full path to the default BEAST2 jar file.
if TRUE show debug output
In newer versions of BEAST2, BEAST2 comes pre-installed with the BEAST2 NS package. For such a version, one cannot install BEAST2 without NS. A warning will be issues if one intends to only install BEAST2 (i.e. without the BEAST2 NS package) and gets the BEAST2 NS package installed as a side effect as well.
Also, installing or uninstalling a BEAST2 package from a BEAST2 installation will affect all installations.
Use get_mcbette_state to get the current mcbette state
Use check_mcbette_state to check the current mcbette state