ots is an R client to retrieve data from various ocean time series datasets, including:

  • BATS
  • HOT
  • CALCOFI
  • LTER Kelp
  • UOPG
  • more to come…

Jump over to the issues page to suggest data sets to include or comment on ongoing data source integration progress.

What’s the point of getting data from the web in R? This way we only have to solve the problem of how to efficiently get a dataset once, then you can benefit from that. In addition, this should allow you to get any changes to the dataset that appear, or corrections. Last, getting data programatically in R should get you one step closer to a reproducible workflow, one that makes science easier primarily for yourself, and for others using your work.

Install

install.packages("devtools")
devtools::install_github("ropensci/ots")
library("ots")

CALCOFI data

calcofi('hydro_cast')
#> <CALCOFI data>
#> Metadata: none yet
#>    cst_cnt         cruise_id      cruz_sta dbsta_id
#> 1        1 1949-03-01-C-31CR 9.629490e-311  5400560
#> 2        2 1949-03-01-C-31CR 9.629490e-311  5200750
#> 3        3 1949-03-01-C-31CR 9.629490e-311  5100850
#> 4        4 1949-03-01-C-31CR 9.629490e-311  5000950
#> 5        5 1949-03-01-C-31CR 9.629490e-311  5001040
#> 6        6 1949-03-01-C-31CR 9.629490e-311  4901140
#> 7        7 1949-03-01-C-31CR 9.629490e-311  5671460
#> 8        8 1949-03-01-C-31CR 9.629490e-311  5671360
#> 9        9 1949-03-01-C-31CR 9.629491e-311  5801270
#> 10      10 1949-03-01-C-31CR 9.629491e-311  5901170
#> ..     ...               ...           ...      ...
#> Variables not shown: cast_id (chr), sta_id (chr), quarter (int), sta_code
#>      (chr), distance (dbl), date (chr), year (int), month (int),
#>      julian_date (int), julian_day (int), time (chr), lat_dec (dbl),
#>      lat_deg (int), lat_min (dbl), lat_hem (chr), lon_dec (dbl), lon_deg
#>      (int), lon_min (dbl), lon_hem (chr), rpt_line (dbl), st_line (dbl),
#>      ac_line (dbl), rpt_sta (dbl), st_station (dbl), ac_sta (dbl),
#>      bottom_d (int), secchi (int), forelu (int), ship_name (chr),
#>      ship_code (chr), data_type (chr), order_occ (int), event_num (int),
#>      cruz_leg (int), orig_sta_id (chr), data_or (chr), cruz_num (chr),
#>      intchl (dbl), intc14 (dbl), inc_str (chr), inc_end (chr), pst_lan
#>      (chr), civil_t (chr), timezone (int), wave_dir (int), wave_ht (int),
#>      wave_prd (int), wind_dir (int), wind_spd (int), barometer (dbl),
#>      dry_t (dbl), wet_t (dbl), wea (int), cloud_typ (int), cloud_amt
#>      (int), visibility (int)

More coming…

Meta

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