Generate a Nix expression that builds a reproducible development environment

Generate a Nix expression that builds a reproducible development environment

Usage

rix(
  r_ver = "latest",
  r_pkgs = NULL,
  system_pkgs = NULL,
  git_pkgs = NULL,
  local_r_pkgs = NULL,
  tex_pkgs = NULL,
  ide = c("other", "code", "radian", "rstudio", "rserver"),
  project_path = ".",
  overwrite = FALSE,
  print = FALSE,
  message_type = "simple",
  shell_hook = NULL
)

Arguments

r_ver

Character, defaults to "latest". The required R version, for example "4.0.0". You can check which R versions are available using available_r(). For reproducibility purposes, you can also provide a nixpkgs revision directly. For older versions of R, nix-build might fail with an error stating 'this derivation is not meant to be built'. In this case, simply drop into the shell with nix-shell instead of building it first. It is also possible to provide either "bleeding_edge" or "frozen_edge" if you need an environment with bleeding edge packages. Read more in the "Details" section below.

r_pkgs

Vector of characters. List the required R packages for your analysis here.

system_pkgs

Vector of characters. List further software you wish to install that are not R packages such as command line applications for example. You can look for available software on the NixOS website https://search.nixos.org/packages?channel=unstable&from=0&size=50&sort=relevance&type=packages&query= # nolint

git_pkgs

List. A list of packages to install from Git. See details for more information.

local_r_pkgs

List. A list of local packages to install. These packages need to be in the .tar.gz or .zip formats and must be in the same folder as the generated "default.nix" file.

tex_pkgs

Vector of characters. A set of TeX packages to install. Use this if you need to compile .tex documents, or build PDF documents using Quarto. If you don't know which package to add, start by adding "amsmath". See the Vignette "Authoring LaTeX documents" for more details.

ide

Character, defaults to "other". If you wish to use RStudio to work interactively use "rstudio" or "rserver" for the server version. Use "code" for Visual Studio Code. You can also use "radian", an interactive REPL. For other editors, use "other". This has been tested with RStudio, VS Code and Emacs. If other editors don't work, please open an issue.

project_path

Character, defaults to the current working directory. Where to write default.nix, for example "/home/path/to/project". The file will thus be written to the file "/home/path/to/project/default.nix". If the folder does not exist, it will be created.

overwrite

Logical, defaults to FALSE. If TRUE, overwrite the default.nix file in the specified path.

print

Logical, defaults to FALSE. If TRUE, print default.nix to console.

message_type

Character. Message type, defaults to "simple", which gives minimal but sufficient feedback. Other values are currently "quiet, which generates the files without message, and "verbose", displays all the messages.

shell_hook

Character of length 1, defaults to NULL. Commands added to the shellHook variable are executed when the Nix shell starts. So by default, using nix-shell default.nix will start a specific program, possibly with flags (separated by space), and/or do shell actions. You can for example use shell_hook = R, if you want to directly enter the declared Nix R session when dropping into the Nix shell.

Value

Nothing, this function only has the side-effect of writing two files: default.nix and .Rprofile in the working directory. default.nix contains a Nix expression to build a reproducible environment using the Nix package manager, and .Rprofile ensures that a running R session from a Nix environment cannot access local libraries, nor install packages using install.packages() (nor remove nor update them).

Details

This function will write a default.nix and an .Rprofile in the chosen path. Using the Nix package manager, it is then possible to build a reproducible development environment using the nix-build command in the path. This environment will contain the chosen version of R and packages, and will not interfere with any other installed version (via Nix or not) on your machine. Every dependency, including both R package dependencies but also system dependencies like compilers will get installed as well in that environment.

It is possible to use environments built with Nix interactively, either from the terminal, or using an interface such as RStudio. If you want to use RStudio, set the ide argument to "rstudio". Please be aware that RStudio is not available for macOS through Nix. As such, you may want to use another editor on macOS. To use Visual Studio Code (or Codium), set the ide argument to "code", which will add the {languageserver} R package to the list of R packages to be installed by Nix in that environment. You can use the version of Visual Studio Code or Codium you already use, or also install it using Nix (by adding "vscode" or "vscodium" to the list of system_pkgs). For non-interactive use, or to use the environment from the command line, or from another editor (such as Emacs or Vim), set the ide argument to "other". We recommend reading the vignette("e-interactive-use") for more details.

Packages to install from Github or Gitlab must be provided in a list of 3 elements: "package_name", "repo_url" and "commit". To install several packages, provide a list of lists of these 3 elements, one per package to install. It is also possible to install old versions of packages by specifying a version. For example, to install the latest version of {AER} but an old version of {ggplot2}, you could write: r_pkgs = c("AER", "ggplot2@2.2.1"). Note however that doing this could result in dependency hell, because an older version of a package might need older versions of its dependencies, but other packages might need more recent versions of the same dependencies. If instead you want to use an environment as it would have looked at the time of {ggplot2}'s version 2.2.1 release, then use the Nix revision closest to that date, by setting r_ver = "3.1.0", which was the version of R current at the time. This ensures that Nix builds a completely coherent environment. For security purposes, users that wish to install packages from Github/Gitlab or from the CRAN archives must provide a security hash for each package. {rix} automatically precomputes this hash for the source directory of R packages from GitHub/Gitlab or from the CRAN archives, to make sure the expected trusted sources that match the precomputed hashes in the default.nix are downloaded. If Nix is available, then the hash will be computed on the user's machine, however, if Nix is not available, then the hash gets computed on a server that we set up for this purposes. This server then returns the security hash as well as the dependencies of the packages. It is possible to control this behaviour using options(rix.sri_hash=x), where x is one of "check_nix" (the default), "locally" (use the local Nix installation) or "api_server" (use the remote server to compute and return the hash).

Note that installing packages from Git or old versions using the "@" notation or local packages, does not leverage Nix's capabilities for dependency solving. As such, you might have trouble installing these packages. If that is the case, open an issue on {rix}'s Github repository.

By default, the Nix shell will be configured with "en_US.UTF-8" for the relevant locale variables (LANG, LC_ALL, LC_TIME, LC_MONETARY, LC_PAPER, LC_MEASUREMENT). This is done to ensure locale reproducibility by default in Nix environments created with rix(). If there are good reasons to not stick to the default, you can set your preferred locale variables via options(rix.nix_locale_variables = list(LANG = "de_CH.UTF-8", <...>) and the aforementioned locale variable names.

It is possible to use "bleeding_edge" or "frozen_edge" as the value for the r_ver argument. This will create an environment with the very latest R packages. "bleeding_edge" means that every time you will build the environment, the packages will get updated. This is especially useful for environments that need to be constantly updated, for example when developing a package. In contrast, "frozen_edge" will create an environment that will remain stable at build time. So if you create a default.nix file using "bleeding_edge", each time you build it using nix-build that environment will be up-to-date. With "frozen_edge" that environment will be up-to-date on the date that the default.nix will be generated, and then each subsequent call to nix-build will result in the same environment. We highly recommend you read the vignette titled "z - Advanced topic: Understanding the rPackages set release cycle and using bleeding edge packages".

Examples

if (FALSE) { # \dontrun{
# Build an environment with the latest version of R
# and the dplyr and ggplot2 packages
rix(
  r_ver = "latest",
  r_pkgs = c("dplyr", "ggplot2"),
  system_pkgs = NULL,
  git_pkgs = NULL,
  local_r_pkgs = NULL,
  ide = "code",
  project_path = path_default_nix,
  overwrite = TRUE,
  print = TRUE,
  message_type = "simple",
  shell_hook = NULL
)
} # }