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Get the traits data from the [ppo_data()] event ids.

Source: R/ppo_traits.R
ppo_traits.Rd

Get the traits data from the [ppo_data()] event ids.

Usage

ppo_traits(x, sorted = TRUE, flatten_traits = TRUE, flatten_all = FALSE)

Arguments

x

(object) As returned from link(rppo)[ppo_data]

sorted

(logical) Should the output traits be sorted by category. Default : TRUE

flatten_traits

(logical) Should the traits list be melted in a data.frame. Default : TRUE

flatten_all

(logical) Should the output list be melted in a data.frame. Default : FALSE

Value

If sorted is TRUE, a list for each event id containing a list with the following elements:

  • `metadata`: A data frame containing metadata

  • `taxonomy`: A data.frame containing the taxonomy

  • `traits`: if flatten_traits is TRUE, a melted data.frame, else a list containing the traits value

Else, a list of data.frames for each event id. IF flatten_all is TRUE, the list is flatten to a data.frame

Examples

r1 <- ppo_data(genus = "Quercus", termID='obo:PPO_0002313', limit=10, timeLimit = 4)
#> sending request for data ...
#> https://biscicol.org/api/v3/download/_search?q=+genus:Quercus++AND+++termID:"obo:PPO_0002313"&limit=10
r1_traits <- ppo_traits(r1)
#> Warning: cannot open URL 'https://www.usanpn.org:443/npn_portal/observations/getObservationById.json?request_src=PPO&observation_id=2484719': HTTP status was '404 Not Found'
#> Error in open.connection(con, "rb"): cannot open the connection to 'http://www.usanpn.org/npn_portal/observations/getObservationById.json?request_src=PPO&observation_id=2484719'