Return a list of merged ROIs made up of atomic ROIs in the Hammer's atlas.
Source:R/ROI_definitions.R
roi_ham_pib.RdThis includes the ROIs from roi_ham_full and also the PIB cortical composite ROI as defined in the PMOD documentation and as widely used in PIB studies. See PMOD Neuro Tool (PNEURO) (Version 4.0) documentation.
Value
A list of lists, where each list is an ROI (e.g.) frontal lobe that specifies the atomic ROIs from the atlas that make it up.
References
Hammers, Alexander, Richard Allom, Matthias J. Koepp, Samantha L. Free, Ralph Myers, Louis Lemieux, Tejal N. Mitchell, David J. Brooks, and John S. Duncan. 2003. Three-dimensional Maximum Probability Atlas of the Human Brain, with Particular Reference to the Temporal Lobe. Human Brain Mapping 19 (4): 224-247. doi:10.1002/hbm.10123
See also
Other ROI definitions: roi_ham_full,
roi_ham_stand
Examples
roi_ham_pib()
#> $leftfrontal
#> [1] "FL_mid_fr_G_l" "FL_precen_G_l" "FL_strai_G_l"
#> [4] "FL_OFC_AOG_l" "FL_inf_fr_G_l" "FL_sup_fr_G_l"
#> [7] "FL_OFC_MOG_l" "FL_OFC_LOG_l" "FL_OFC_POG_l"
#> [10] "Subgen_antCing_l" "Subcall_area_l" "Presubgen_antCing_l"
#>
#> $rightfrontal
#> [1] "FL_mid_fr_G_r" "FL_precen_G_r" "FL_strai_G_r"
#> [4] "FL_OFC_AOG_r" "FL_inf_fr_G_r" "FL_sup_fr_G_r"
#> [7] "FL_OFC_MOG_r" "FL_OFC_LOG_r" "FL_OFC_POG_r"
#> [10] "Subgen_antCing_r" "Subcall_area_r" "Presubgen_antCing_r"
#>
#> $lefttemporal
#> [1] "Hippocampus_l" "Amygdala_l" "Ant_TL_med_l"
#> [4] "Ant_TL_inf_lat_l" "G_paraH_amb_l" "G_sup_temp_post_l"
#> [7] "G_tem_midin_l" "G_fus_l" "Post_TL_l"
#> [10] "G_sup_temp_ant_l"
#>
#> $righttemporal
#> [1] "Hippocampus_r" "Amygdala_r" "Ant_TL_med_r"
#> [4] "Ant_TL_inf_lat_r" "G_paraH_amb_r" "G_sup_temp_post_r"
#> [7] "G_tem_midin_r" "G_fus_r" "Post_TL_r"
#> [10] "G_sup_temp_ant_r"
#>
#> $leftparietal
#> [1] "PL_postce_G_l" "PL_sup_pa_G_l" "PL_rest_l"
#>
#> $rightparietal
#> [1] "PL_postce_G_r" "PL_sup_pa_G_r" "PL_rest_r"
#>
#> $leftoccipital
#> [1] "OL_rest_lat_l" "OL_ling_G_l" "OL_cuneus_l"
#>
#> $rightoccipital
#> [1] "OL_rest_lat_r" "OL_ling_G_r" "OL_cuneus_r"
#>
#> $leftcingulate
#> [1] "G_cing_ant_l" "G_cing_post_l"
#>
#> $rightcingulate
#> [1] "G_cing_ant_r" "G_cing_post_r"
#>
#> $frontal
#> [1] "FL_mid_fr_G_l" "FL_precen_G_l" "FL_strai_G_l"
#> [4] "FL_OFC_AOG_l" "FL_inf_fr_G_l" "FL_sup_fr_G_l"
#> [7] "FL_OFC_MOG_l" "FL_OFC_LOG_l" "FL_OFC_POG_l"
#> [10] "Subgen_antCing_l" "Subcall_area_l" "Presubgen_antCing_l"
#> [13] "FL_mid_fr_G_r" "FL_precen_G_r" "FL_strai_G_r"
#> [16] "FL_OFC_AOG_r" "FL_inf_fr_G_r" "FL_sup_fr_G_r"
#> [19] "FL_OFC_MOG_r" "FL_OFC_LOG_r" "FL_OFC_POG_r"
#> [22] "Subgen_antCing_r" "Subcall_area_r" "Presubgen_antCing_r"
#>
#> $temporal
#> [1] "Hippocampus_l" "Amygdala_l" "Ant_TL_med_l"
#> [4] "Ant_TL_inf_lat_l" "G_paraH_amb_l" "G_sup_temp_post_l"
#> [7] "G_tem_midin_l" "G_fus_l" "Post_TL_l"
#> [10] "G_sup_temp_ant_l" "Hippocampus_r" "Amygdala_r"
#> [13] "Ant_TL_med_r" "Ant_TL_inf_lat_r" "G_paraH_amb_r"
#> [16] "G_sup_temp_post_r" "G_tem_midin_r" "G_fus_r"
#> [19] "Post_TL_r" "G_sup_temp_ant_r"
#>
#> $parietal
#> [1] "PL_postce_G_l" "PL_sup_pa_G_l" "PL_rest_l" "PL_postce_G_r"
#> [5] "PL_sup_pa_G_r" "PL_rest_r"
#>
#> $occipital
#> [1] "OL_rest_lat_l" "OL_ling_G_l" "OL_cuneus_l" "OL_rest_lat_r"
#> [5] "OL_ling_G_r" "OL_cuneus_r"
#>
#> $cingulate
#> [1] "G_cing_ant_l" "G_cing_post_l" "G_cing_ant_r" "G_cing_post_r"
#>
#> $cerebellum
#> [1] "Cerebellum_l" "Cerebellum_r"
#>
#> $totalcortical
#> [1] "FL_mid_fr_G_l" "FL_precen_G_l" "FL_strai_G_l"
#> [4] "FL_OFC_AOG_l" "FL_inf_fr_G_l" "FL_sup_fr_G_l"
#> [7] "FL_OFC_MOG_l" "FL_OFC_LOG_l" "FL_OFC_POG_l"
#> [10] "Subgen_antCing_l" "Subcall_area_l" "Presubgen_antCing_l"
#> [13] "FL_mid_fr_G_r" "FL_precen_G_r" "FL_strai_G_r"
#> [16] "FL_OFC_AOG_r" "FL_inf_fr_G_r" "FL_sup_fr_G_r"
#> [19] "FL_OFC_MOG_r" "FL_OFC_LOG_r" "FL_OFC_POG_r"
#> [22] "Subgen_antCing_r" "Subcall_area_r" "Presubgen_antCing_r"
#> [25] "Hippocampus_l" "Amygdala_l" "Ant_TL_med_l"
#> [28] "Ant_TL_inf_lat_l" "G_paraH_amb_l" "G_sup_temp_post_l"
#> [31] "G_tem_midin_l" "G_fus_l" "Post_TL_l"
#> [34] "G_sup_temp_ant_l" "Hippocampus_r" "Amygdala_r"
#> [37] "Ant_TL_med_r" "Ant_TL_inf_lat_r" "G_paraH_amb_r"
#> [40] "G_sup_temp_post_r" "G_tem_midin_r" "G_fus_r"
#> [43] "Post_TL_r" "G_sup_temp_ant_r" "PL_postce_G_l"
#> [46] "PL_sup_pa_G_l" "PL_rest_l" "PL_postce_G_r"
#> [49] "PL_sup_pa_G_r" "PL_rest_r" "OL_rest_lat_l"
#> [52] "OL_ling_G_l" "OL_cuneus_l" "OL_rest_lat_r"
#> [55] "OL_ling_G_r" "OL_cuneus_r" "G_cing_ant_l"
#> [58] "G_cing_post_l" "G_cing_ant_r" "G_cing_post_r"
#>
#> $leftdeep
#> [1] "CaudateNucl_l" "NuclAccumb_l" "Putamen_l" "Thalamus_l"
#> [5] "Pallidum_l"
#>
#> $rightdeep
#> [1] "CaudateNucl_r" "NuclAccumb_r" "Putamen_r" "Thalamus_r"
#> [5] "Pallidum_r"
#>
#> $deep
#> [1] "CaudateNucl_l" "NuclAccumb_l" "Putamen_l" "Thalamus_l"
#> [5] "Pallidum_l" "CaudateNucl_r" "NuclAccumb_r" "Putamen_r"
#> [9] "Thalamus_r" "Pallidum_r"
#>
#> $ventricles
#> [1] "FrontalHorn_l" "FrontalHorn_r" "TemporaHorn_r" "TemporaHorn_l"
#> [5] "ThirdVentricl"
#>
#> $whitematter
#> [1] "White_matter_l" "White_matter_r"
#>
#> $amyloidcomp
#> [1] "FL_mid_fr_G_l" "FL_strai_G_l" "FL_sup_fr_G_l"
#> [4] "FL_OFC_MOG_l" "FL_OFC_LOG_l" "FL_OFC_POG_l"
#> [7] "Subgen_antCing_l" "Subcall_area_l" "G_sup_temp_post_l"
#> [10] "G_tem_midin_l" "G_sup_temp_ant_l" "PL_sup_pa_G_l"
#> [13] "PL_rest_l" "G_cing_ant_l" "G_cing_post_l"
#> [16] "FL_mid_fr_G_r" "FL_strai_G_r" "FL_sup_fr_G_r"
#> [19] "FL_OFC_MOG_r" "FL_OFC_LOG_r" "FL_OFC_POG_r"
#> [22] "Subgen_antCing_r" "Subcall_area_r" "G_sup_temp_post_r"
#> [25] "G_tem_midin_r" "G_sup_temp_ant_r" "PL_sup_pa_G_r"
#> [28] "PL_rest_r" "G_cing_ant_r" "G_cing_post_r"
#>