The list of known databases. Not currently used much, but will be when we add more check for taxon IDs and taxon ranks from particular databases.

database_list

Format

An object of class list of length 8.

Details

List of databases with pre-filled details, where each has the format:

  • url: A base URL for the database source.

  • description: Description of the database source.

  • id regex: identifier regex.

See also

Examples

database_list
#> $ncbi #> <database> ncbi #> url: http://www.ncbi.nlm.nih.gov/taxonomy #> description: NCBI Taxonomy Database #> id regex: .* #> #> $gbif #> <database> gbif #> url: http://www.gbif.org/developer/species #> description: GBIF Taxonomic Backbone #> id regex: .* #> #> $bold #> <database> bold #> url: http://www.boldsystems.org #> description: Barcode of Life #> id regex: .* #> #> $col #> <database> col #> url: http://www.catalogueoflife.org #> description: Catalogue of Life #> id regex: .* #> #> $eol #> <database> eol #> url: http://eol.org #> description: Encyclopedia of Life #> id regex: .* #> #> $nbn #> <database> nbn #> url: https://nbn.org.uk #> description: UK National Biodiversity Network #> id regex: .* #> #> $tps #> <database> tps #> url: http://www.tropicos.org/ #> description: Tropicos #> id regex: .* #> #> $itis #> <database> itis #> url: http://www.itis.gov #> description: Integrated Taxonomic Information System #> id regex: .* #>
database_list$ncbi
#> <database> ncbi #> url: http://www.ncbi.nlm.nih.gov/taxonomy #> description: NCBI Taxonomy Database #> id regex: .*
database_list$ncbi$name
#> [1] "ncbi"
database_list$ncbi$description
#> [1] "NCBI Taxonomy Database"
database_list$ncbi$url
#> [1] "http://www.ncbi.nlm.nih.gov/taxonomy"