Database list

The list of known databases. Not currently used much, but will be when we add more check for taxon IDs and taxon ranks from particular databases.

database_list

Format

An object of class list of length 8.

Details

List of databases with pre-filled details, where each has the format:

• url: A base URL for the database source.

• description: Description of the database source.

• id regex: identifier regex.

See also

taxon_database

Examples

database_list
#> $ncbi
#> <database> ncbi
#>   url: http://www.ncbi.nlm.nih.gov/taxonomy
#>   description: NCBI Taxonomy Database
#>   id regex: .*
#> 
#> $gbif
#> <database> gbif
#>   url: http://www.gbif.org/developer/species
#>   description: GBIF Taxonomic Backbone
#>   id regex: .*
#> 
#> $bold
#> <database> bold
#>   url: http://www.boldsystems.org
#>   description: Barcode of Life
#>   id regex: .*
#> 
#> $col
#> <database> col
#>   url: http://www.catalogueoflife.org
#>   description: Catalogue of Life
#>   id regex: .*
#> 
#> $eol
#> <database> eol
#>   url: http://eol.org
#>   description: Encyclopedia of Life
#>   id regex: .*
#> 
#> $nbn
#> <database> nbn
#>   url: https://nbn.org.uk
#>   description: UK National Biodiversity Network
#>   id regex: .*
#> 
#> $tps
#> <database> tps
#>   url: http://www.tropicos.org/
#>   description: Tropicos
#>   id regex: .*
#> 
#> $itis
#> <database> itis
#>   url: http://www.itis.gov
#>   description: Integrated Taxonomic Information System
#>   id regex: .*
#> 
database_list$ncbi
#> <database> ncbi
#>   url: http://www.ncbi.nlm.nih.gov/taxonomy
#>   description: NCBI Taxonomy Database
#>   id regex: .*
database_list$ncbi$name
#> [1] "ncbi"
database_list$ncbi$description
#> [1] "NCBI Taxonomy Database"
database_list$ncbi$url
#> [1] "http://www.ncbi.nlm.nih.gov/taxonomy"