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OPSIN web interface

Source: R/opsin.R
opsin_query.Rd

Query the OPSIN (Open Parser for Systematic IUPAC nomenclature) web service https://opsin.ch.cam.ac.uk/instructions.html.

Usage

opsin_query(query, verbose = getOption("verbose"), ...)

Arguments

query

character; chemical name that should be queryed.

verbose

logical; should a verbose output be printed on the console?

...

currently not used.

Value

a tibble with six columnns: "query", inchi", "stdinchi", "stdinchikey", "smiles", "message", and "status"

References

Lowe, D. M., Corbett, P. T., Murray-Rust, P., & Glen, R. C. (2011). Chemical Name to Structure: OPSIN, an Open Source Solution. Journal of Chemical Information and Modeling, 51(3), 739–753. doi:10.1021/ci100384d

Examples

if (FALSE) { # \dontrun{
opsin_query('Cyclopropane')
opsin_query(c('Cyclopropane', 'Octane'))
opsin_query(c('Cyclopropane', 'Octane', 'xxxxx'))
} # }