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Retrieve names of all species/otus otus (operational taxonomic units) included in the nexml

Usage

get_taxa(nexml)

Arguments

nexml

a nexml object

Value

the list of taxa

See also

Examples

comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_taxa(nex)
#> Warning: `select_()` was deprecated in dplyr 0.7.0.
#> Please use `select()` instead.
#> This warning is displayed once every 8 hours.
#> Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
#>             otu    label xsi.type otus
#> label...1   ou3  taxon_1       NA  os2
#> label...2   ou4  taxon_2       NA  os2
#> label...3   ou5  taxon_3       NA  os2
#> label...4   ou6  taxon_4       NA  os2
#> label...5   ou7  taxon_5       NA  os2
#> label...6   ou8  taxon_6       NA  os2
#> label...7   ou9  taxon_7       NA  os2
#> label...8  ou10  taxon_8       NA  os2
#> label...9  ou11  taxon_9       NA  os2
#> label...10 ou12 taxon_10       NA  os2