validate nexml using the online validator tool
Usage
nexml_validate(
file,
schema = system.file("xsd/nexml.xsd", package = "RNeXML"),
local = TRUE
)
Arguments
- file
path to the nexml file to validate
- schema
URL of schema (for fallback method only, set by default).
- local
logical, if TRUE we skip the online validator and rely only on pure XML-schema validation. This may fail to detect invalid use of some semantic elements.
Details
Requires an internet connection if local=FALSE. see http://www.nexml.org/nexml/phylows/validator for more information in debugging invalid files
Examples
if (FALSE) {
data(bird.orders)
birds <- nexml_write(bird.orders, "birds_orders.xml")
nexml_validate("birds_orders.xml")
unlink("birds_orders.xml") # delete file to clean up
}