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babette
is an R package that combines:
.xml
) file from an inference model.xml
) file ⚠️ experimental ⚠️
.log
, .trees
, etc) files.Related R packages:
Related R functions:
Related function |
babette function |
---|---|
[ips::rbeauti](https://github.com/heibl/ips/blob/master/R/rbeauti.R) |
[beautier::create_beast2_input_from_model](https://github.com/ropensci/beautier/blob/master/R/create_beast2_input_from_model.R) |
Related software:
See:
See doc/install.md (or just click here)
See FAQ.
babette
cannot do everything BEAUti
and BEAST2
and Tracer
can.
See beautier for missing features in creating a BEAST2 input (.xml
) file.
See beastier for missing features in running BEAST2
See mauricer for missing features in installing BEAST2 packages.
See tracerer for missing features in parsing BEAST2 output (.log
, .trees
, etc) files.
See CONTRIBUTING, at Submitting use cases
See CONTRIBUTING, at Submitting code
See CONTRIBUTING, at Submitting bugs
Package | Status |
---|---|
babette_on_windows | |
beastier_on_windows | |
beautier_on_windows | |
mauricer_on_windows | |
tracerer_on_windows |
Article about babette
:
@article{bilderbeek2018babette,
title={babette: BEAUti 2, BEAST 2 and Tracer for R},
author={Bilderbeek, Richèl JC and Etienne, Rampal S},
journal={Methods in Ecology and Evolution},
year={2018},
publisher={Wiley Online Library}
}
FASTA files anthus_aco.fas
and anthus_nd2.fas
from: