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beastier: A package to call BEAST2.

Source: R/beastier-package.R
beastier-package.Rd

beastier allows to call BEAST2, a popular Bayesian phylogenetics tool, using an R interface. 'beastier' closely follows the interface of BEAST2, including its default settings.

See also

These are packages associated with beastier:

  • The package beautier can create BEAST2 input files from R

  • The package tracerer can parse BEAST2 output files from R

  • The package babette combines the functionality of beautier, beastier and tracerer into a single workflow

Author

Richèl J.C. Bilderbeek

Examples

check_empty_beaustier_folders()

beast2_options <- create_beast2_options(
  input_filename = get_beastier_path("2_4.xml")
)

if (is_beast2_installed() && beautier::is_on_ci()) {
  run_beast2_from_options(beast2_options)
  file.remove(beast2_options$output_state_filename)
  remove_beaustier_folders()
}