Usage
beastier_report(
beast2_folder = get_default_beast2_folder(),
os = rappdirs::app_dir()$os
)Arguments
- beast2_folder
the folder where the BEAST2 is installed. Note that this is not the folder where the BEAST2 executable is installed: the BEAST2 executable is in a subfolder. Use get_default_beast2_folder to get the default BEAST2 folder. Use get_default_beast2_bin_path to get the full path to the default BEAST2 executable.
- os
name of the operating system, must be
unix(Linux, Mac) orwin(Windows)
Value
No return value, the information will be shown using message
Examples
check_empty_beaustier_folders()
beastier_report()
#> ***********
#> * beastier *
#> ***********
#> OS: unix
#> beast2_folder: ~/.local/share
#> beast2_path: /github/home/.local/share/beast/lib/launcher.jar
#> ****************
#> * Dependencies *
#> ****************
#> beautier version: 2.6.11
#> beastier version: 2.5
#> **********
#> * BEAST2 *
#> **********
#> Java version: 11.0.20.1+1-post-Ubuntu-0ubuntu122.04
#> Is BEAST2 installed: FALSE
#> ****************
#> * session info *
#> ****************
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.3.2 (2023-10-31)
#> os Ubuntu 22.04.3 LTS
#> system x86_64, linux-gnu
#> ui X11
#> language en
#> collate C
#> ctype en_US.UTF-8
#> tz Etc/UTC
#> date 2023-11-07
#> pandoc 2.16.2 @ /usr/local/bin/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> beastier * 2.5 2023-11-07 [1] local (/tmp/Rtmpwcr9Zj/beastier-source)
#> beautier 2.6.11 2023-11-03 [1] https://ropensci.r-universe.dev (R 4.3.1)
#> bslib 0.5.1 2023-08-11 [1] RSPM (R 4.3.0)
#> cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0)
#> cli 3.6.1 2023-03-23 [1] RSPM (R 4.3.0)
#> curl 5.1.0 2023-10-02 [1] RSPM (R 4.3.0)
#> desc 1.4.2 2022-09-08 [1] RSPM (R 4.3.0)
#> digest 0.6.33 2023-07-07 [1] RSPM (R 4.3.0)
#> downlit 0.4.3 2023-06-29 [1] RSPM (R 4.3.0)
#> evaluate 0.23 2023-11-01 [1] CRAN (R 4.3.2)
#> fansi 1.0.5 2023-10-08 [1] RSPM (R 4.3.0)
#> fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0)
#> fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0)
#> glue 1.6.2 2022-02-24 [1] RSPM (R 4.3.0)
#> htmltools 0.5.7 2023-11-03 [1] CRAN (R 4.3.2)
#> httr 1.4.7 2023-08-15 [1] RSPM (R 4.3.0)
#> jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.3.0)
#> jsonlite 1.8.7 2023-06-29 [1] RSPM (R 4.3.0)
#> knitr 1.45 2023-10-30 [1] RSPM (R 4.3.0)
#> lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.3.2)
#> magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0)
#> memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0)
#> pillar 1.9.0 2023-03-22 [1] RSPM (R 4.3.0)
#> pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.3.0)
#> pkgdown 2.0.7 2022-12-14 [1] RSPM (R 4.3.0)
#> purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0)
#> R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0)
#> ragg 1.2.6 2023-10-10 [1] RSPM (R 4.3.0)
#> rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.3.0)
#> remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0)
#> rJava 1.0-6 2021-12-10 [2] CRAN (R 4.1.2)
#> rlang 1.1.2 2023-11-04 [1] CRAN (R 4.3.2)
#> rmarkdown 2.25 2023-09-18 [1] RSPM (R 4.3.0)
#> rotemplate 2.0.0 2023-11-03 [1] Github (ropensci/rotemplate@4644c12)
#> rprojroot 2.0.4 2023-11-05 [1] CRAN (R 4.3.2)
#> rstudioapi 0.15.0 2023-07-07 [1] RSPM (R 4.3.0)
#> sass 0.4.7 2023-07-15 [1] RSPM (R 4.3.0)
#> sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0)
#> stringi 1.7.12 2023-01-11 [1] RSPM (R 4.3.0)
#> stringr 1.5.0 2022-12-02 [1] RSPM (R 4.3.0)
#> systemfonts 1.0.5 2023-10-09 [1] RSPM (R 4.3.0)
#> textshaping 0.3.7 2023-10-09 [1] RSPM (R 4.3.0)
#> tibble 3.2.1 2023-03-20 [1] RSPM (R 4.3.0)
#> utf8 1.2.4 2023-10-22 [1] RSPM (R 4.3.0)
#> vctrs 0.6.4 2023-10-12 [1] RSPM (R 4.3.0)
#> whisker 0.4.1 2022-12-05 [1] RSPM (R 4.3.0)
#> withr 2.5.2 2023-10-30 [1] RSPM (R 4.3.0)
#> xfun 0.41 2023-11-01 [1] CRAN (R 4.3.2)
#> xml2 1.3.5 2023-07-06 [1] RSPM (R 4.3.0)
#> yaml 2.3.7 2023-01-23 [1] RSPM (R 4.3.0)
#>
#> [1] /usr/local/lib/R/site-library
#> [2] /usr/lib/R/site-library
#> [3] /usr/lib/R/library
#>
#> ──────────────────────────────────────────────────────────────────────────────
check_empty_beaustier_folders()