Usage
beastier_report(
beast2_folder = get_default_beast2_folder(),
os = rappdirs::app_dir()$os
)Arguments
- beast2_folder
the folder where the BEAST2 is installed. Note that this is not the folder where the BEAST2 executable is installed: the BEAST2 executable is in a subfolder. Use get_default_beast2_folder to get the default BEAST2 folder. Use get_default_beast2_bin_path to get the full path to the default BEAST2 executable.
- os
name of the operating system, must be
unix(Linux, Mac) orwin(Windows)
Value
No return value, the information will be shown using message
Examples
check_empty_beaustier_folders()
beastier_report()
#> ***********
#> * beastier *
#> ***********
#> OS: unix
#> beast2_folder: ~/.local/share
#> beast2_path: /github/home/.local/share/beast/lib/launcher.jar
#> ****************
#> * Dependencies *
#> ****************
#> beautier version: 2.6.13
#> beastier version: 2.5.2
#> **********
#> * BEAST2 *
#> **********
#> Java version: 21.0.4+7-Ubuntu-1ubuntu224.04
#> Is BEAST2 installed: FALSE
#> ****************
#> * session info *
#> ****************
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.4.1 (2024-06-14)
#> os Ubuntu 24.04.1 LTS
#> system x86_64, linux-gnu
#> ui X11
#> language en
#> collate C
#> ctype en_US.UTF-8
#> tz Etc/UTC
#> date 2024-11-03
#> pandoc 3.2.1 @ /usr/local/bin/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> askpass 1.2.0 2023-09-03 [1] RSPM (R 4.4.0)
#> beastier * 2.5.2 2024-11-03 [1] local (/tmp/RtmpyNcNIV/beastier-source)
#> beautier 2.6.13 2024-10-28 [1] https://ropensci.r-universe.dev (R 4.4.1)
#> bslib 0.8.0 2024-07-29 [1] RSPM (R 4.4.0)
#> cachem 1.1.0 2024-05-16 [1] RSPM (R 4.4.0)
#> cli 3.6.3 2024-06-21 [1] RSPM (R 4.4.0)
#> curl 5.2.2 2024-08-26 [1] RSPM (R 4.4.0)
#> desc 1.4.3 2023-12-10 [1] RSPM (R 4.4.0)
#> digest 0.6.37 2024-08-19 [1] RSPM (R 4.4.0)
#> downlit 0.4.4 2024-06-10 [1] RSPM (R 4.4.0)
#> evaluate 1.0.1.9000 2024-10-29 [1] https://ropensci.r-universe.dev (R 4.4.1)
#> fansi 1.0.6 2023-12-08 [1] RSPM (R 4.4.0)
#> fastmap 1.2.0 2024-05-15 [1] RSPM (R 4.4.0)
#> fontawesome 0.5.2 2023-08-19 [1] RSPM (R 4.4.0)
#> fs 1.6.5 2024-10-30 [1] RSPM (R 4.4.0)
#> glue 1.8.0 2024-09-30 [1] RSPM (R 4.4.0)
#> htmltools 0.5.8.1 2024-04-04 [1] RSPM (R 4.4.0)
#> httr2 1.0.3 2024-08-22 [1] RSPM (R 4.4.0)
#> jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.4.0)
#> jsonlite 1.8.9 2024-09-20 [1] RSPM (R 4.4.0)
#> knitr 1.48 2024-07-07 [1] RSPM (R 4.4.0)
#> lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.4.0)
#> magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.4.0)
#> memoise 2.0.1 2021-11-26 [1] RSPM (R 4.4.0)
#> openssl 2.2.1 2024-08-16 [1] RSPM (R 4.4.0)
#> pillar 1.9.0 2023-03-22 [1] RSPM (R 4.4.0)
#> pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.4.0)
#> pkgdown 2.1.0 2024-07-06 [1] RSPM (R 4.4.0)
#> purrr 1.0.2 2023-08-10 [1] RSPM (R 4.4.0)
#> R6 2.5.1 2021-08-19 [1] RSPM (R 4.4.0)
#> rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.4.0)
#> remotes 2.5.0 2024-03-17 [1] RSPM (R 4.4.0)
#> rJava 1.0-11 2024-01-26 [2] CRAN (R 4.3.2)
#> rlang 1.1.4 2024-06-04 [1] RSPM (R 4.4.0)
#> rmarkdown 2.28 2024-08-17 [1] RSPM (R 4.4.0)
#> rotemplate 2.0.1 2024-08-30 [1] Github (ropensci/rotemplate@49d51d2)
#> rstudioapi 0.16.0 2024-03-24 [1] RSPM (R 4.4.0)
#> sass 0.4.9 2024-03-15 [1] RSPM (R 4.4.0)
#> sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.4.0)
#> stringi 1.8.4 2024-05-06 [1] RSPM (R 4.4.0)
#> stringr 1.5.1 2023-11-14 [1] RSPM (R 4.4.0)
#> tibble 3.2.1 2023-03-20 [1] RSPM (R 4.4.0)
#> utf8 1.2.4 2023-10-22 [1] RSPM (R 4.4.0)
#> vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.4.0)
#> whisker 0.4.1 2022-12-05 [1] RSPM (R 4.4.0)
#> withr 3.0.2 2024-10-28 [1] RSPM (R 4.4.0)
#> xfun 0.49 2024-10-31 [1] RSPM (R 4.4.0)
#> xml2 1.3.6 2023-12-04 [1] RSPM (R 4.4.0)
#> yaml 2.3.10 2024-07-26 [1] RSPM (R 4.4.0)
#>
#> [1] /usr/local/lib/R/site-library
#> [2] /usr/lib/R/site-library
#> [3] /usr/lib/R/library
#>
#> ──────────────────────────────────────────────────────────────────────────────
check_empty_beaustier_folders()