Usage
beastier_report(
beast2_folder = get_default_beast2_folder(),
os = rappdirs::app_dir()$os
)Arguments
- beast2_folder
the folder where the BEAST2 is installed. Note that this is not the folder where the BEAST2 executable is installed: the BEAST2 executable is in a subfolder. Use get_default_beast2_folder to get the default BEAST2 folder. Use get_default_beast2_bin_path to get the full path to the default BEAST2 executable.
- os
name of the operating system, must be
unix(Linux, Mac) orwin(Windows)
Value
No return value, the information will be shown using message
Examples
check_empty_beaustier_folders()
beastier_report()
#> ***********
#> * beastier *
#> ***********
#> OS: unix
#> beast2_folder: ~/.local/share
#> beast2_path: /github/home/.local/share/beast/lib/launcher.jar
#> ****************
#> * Dependencies *
#> ****************
#> beautier version: 2.6.13
#> beastier version: 2.5.2
#> **********
#> * BEAST2 *
#> **********
#> Java version: 21.0.6+7-Ubuntu-124.04.1
#> Is BEAST2 installed: FALSE
#> ****************
#> * session info *
#> ****************
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.5.0 (2025-04-11)
#> os Ubuntu 24.04.2 LTS
#> system x86_64, linux-gnu
#> ui X11
#> language en-US
#> collate C
#> ctype en_US.UTF-8
#> tz Etc/UTC
#> date 2025-05-02
#> pandoc 3.1.11 @ /__t/pandoc/3.1.11/x64/ (via rmarkdown)
#> quarto 1.6.43 @ /usr/local/bin/quarto
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> askpass 1.2.1 2024-10-04 [1] RSPM
#> beastier * 2.5.2 2025-05-02 [1] local
#> beautier 2.6.13 2025-04-29 [1] https://r~
#> bslib 0.9.0 2025-01-30 [1] RSPM
#> cachem 1.1.0 2024-05-16 [1] RSPM
#> cli 3.6.5 2025-04-23 [1] RSPM
#> curl 6.2.2 2025-03-24 [1] RSPM
#> desc 1.4.3 2023-12-10 [1] RSPM
#> digest 0.6.37 2024-08-19 [1] RSPM
#> downlit 0.4.4 2024-06-10 [1] RSPM
#> evaluate 1.0.3 2025-01-10 [1] RSPM
#> fansi 1.0.6 2023-12-08 [1] RSPM
#> fastmap 1.2.0 2024-05-15 [1] RSPM
#> fontawesome 0.5.3 2024-11-16 [1] RSPM
#> fs 1.6.6 2025-04-12 [1] RSPM
#> glue 1.8.0 2024-09-30 [1] RSPM
#> htmltools 0.5.8.1 2024-04-04 [1] RSPM
#> httr2 1.1.2 2025-03-26 [1] RSPM
#> jquerylib 0.1.4 2021-04-26 [1] RSPM
#> jsonlite 2.0.0 2025-03-27 [1] RSPM
#> knitr 1.50 2025-03-16 [1] RSPM
#> lifecycle 1.0.4 2023-11-07 [1] RSPM
#> magrittr 2.0.3 2022-03-30 [1] RSPM
#> memoise 2.0.1 2021-11-26 [1] RSPM
#> openssl 2.3.2 2025-02-03 [1] RSPM
#> pillar 1.10.2 2025-04-05 [1] RSPM
#> pkgconfig 2.0.3 2019-09-22 [1] RSPM
#> pkgdown 2.1.2 2025-04-28 [1] RSPM
#> purrr 1.0.4 2025-02-05 [1] RSPM
#> R6 2.6.1 2025-02-15 [1] RSPM
#> rappdirs 0.3.3 2021-01-31 [1] RSPM
#> remotes 2.5.0 2024-03-17 [2] RSPM (R 4.5.0)
#> rJava 1.0-11 2024-01-26 [1] RSPM
#> rlang 1.1.6 2025-04-11 [1] RSPM
#> rmarkdown 2.29 2024-11-04 [1] RSPM
#> rotemplate 2.0.1 2025-05-02 [1] Github (ropensci-org/rotemplate@526e361)
#> rstudioapi 0.17.1 2024-10-22 [1] RSPM
#> sass 0.4.10 2025-04-11 [1] RSPM
#> sessioninfo 1.2.3 2025-02-05 [1] RSPM
#> stringi 1.8.7 2025-03-27 [1] RSPM
#> stringr 1.5.1 2023-11-14 [1] RSPM
#> tibble 3.2.1 2023-03-20 [1] RSPM
#> utf8 1.2.5 2025-05-01 [1] RSPM
#> vctrs 0.6.5 2023-12-01 [1] RSPM
#> whisker 0.4.1 2022-12-05 [1] RSPM
#> withr 3.0.2 2024-10-28 [1] RSPM
#> xfun 0.52 2025-04-02 [1] RSPM
#> xml2 1.3.8 2025-03-14 [1] RSPM
#> yaml 2.3.10 2024-07-26 [1] RSPM
#>
#> [1] /github/home/R/x86_64-pc-linux-gnu-library/4.5
#> [2] /usr/local/lib/R/site-library
#> [3] /usr/lib/R/site-library
#> [4] /usr/lib/R/library
#> * ── Packages attached to the search path.
#>
#> ──────────────────────────────────────────────────────────────────────────────
check_empty_beaustier_folders()