Determine if the MRCA priors' alignment IDs are present in the FASTA files

Determine if the MRCA priors' alignment IDs are present in the FASTA files

Usage

are_mrca_align_ids_in_fasta(mrca_prior, fasta_filename)

Arguments

mrca_prior

a Most Recent Common Ancestor prior, as returned by create_mrca_prior

fasta_filename

a FASTA filename. Use get_fasta_filename to obtain a testing FASTA filename. Note that BEAST2 also supports missing data, by using a dash (-) or question mark (?) as a sequence.

Value

TRUE if all the MRCA priors' alignment IDs are present in the FASTA files. Returns FALSE otherwise

Author

Richèl J.C. Bilderbeek