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Determine if the MRCA priors' taxa names are present in the FASTA files

Source: R/are_mrca_taxon_names_in_fasta.R
are_mrca_taxon_names_in_fasta.Rd

Determine if the MRCA priors' taxa names are present in the FASTA files

Usage

are_mrca_taxon_names_in_fasta(mrca_prior, fasta_filename)

Arguments

mrca_prior

a Most Recent Common Ancestor prior, as returned by create_mrca_prior

fasta_filename

a FASTA filename. Use get_fasta_filename to obtain a testing FASTA filename. Note that BEAST2 also supports missing data, by using a dash (-) or question mark (?) as a sequence.

Value

TRUE if the MRCA priors' taxa names are present in the FASTA files. FALSE otherwise.

Author

Richèl J.C. Bilderbeek