Will stop if not

check_file_and_model_agree(input_filename, inference_model)



A FASTA filename. Use get_fasta_filename to obtain a testing FASTA filename.


a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.