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Create a Birth-Death tree prior

Source: R/create_tree_prior.R
create_bd_tree_prior.Rd

Create a Birth-Death tree prior

Usage

create_bd_tree_prior(
  id = NA,
  birth_rate_distr = create_uniform_distr(),
  death_rate_distr = create_uniform_distr()
)

Arguments

id

the ID of the alignment

birth_rate_distr

the birth rate distribution, as created by a create_distr function

death_rate_distr

the death rate distribution, as created by a create_distr function

Value

a Birth-Death tree_prior

See also

An alignment ID can be extracted from its FASTA filename using get_alignment_id

Author

Richèl J.C. Bilderbeek

Examples

if (is_on_ci()) {

  bd_tree_prior <- create_bd_tree_prior()

  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = bd_tree_prior
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}