Create a parameter called 'rate AT'

create_rate_at_param(id = NA, estimate = TRUE, value = "1.0", lower = "0.0")

Arguments

id

the parameter's ID

estimate

TRUE if this parameter is to be estimated by BEAST2, FALSE otherwise

value

value of the parameter

lower

lowest possible value of the parameter. If the parameter is estimated, lower must be less than value

Value

a parameter called 'rate AT'

See also

the function create_param contains a list of all parameters that can be created

Author

Richèl J.C. Bilderbeek

Examples

# Create parameter
rate_at_param <- create_rate_at_param(value = 1, estimate = FALSE)

# Use the parameter to create a BEAST2 input file
beast2_input_file <- get_beautier_tempfilename()
create_beast2_input_file(
  input_filename = get_fasta_filename(),
  beast2_input_file,
  site_model = create_gtr_site_model(
    rate_at_param = rate_at_param
  )
)
file.remove(beast2_input_file)
#> [1] TRUE