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Creates the taxonset section in the prior section of the distribution section of a BEAST2 XML parameter file.

Source: R/mrca_prior_to_xml_taxonset.R
mrca_prior_to_xml_taxonset.Rd

Creates the taxonset section in the prior section of the distribution section of a BEAST2 XML parameter file.

Usage

mrca_prior_to_xml_taxonset(mrca_prior, taxa_names_with_ids = NULL)

Arguments

mrca_prior

a Most Recent Common Ancestor prior, as returned by create_mrca_prior

taxa_names_with_ids

taxa names that already have received an ID. Causes the XML to idref these

Value

lines of XML text

Details

<taxonset id="all" spec="TaxonSet"> <taxon id="626029_aco" spec="Taxon"/> <taxon id="630116_aco" spec="Taxon"/> <taxon id="630210_aco" spec="Taxon"/> <taxon id="B25702_aco" spec="Taxon"/> <taxon id="61430_aco" spec="Taxon"/> </taxonset>

Author

Richèl J.C. Bilderbeek