Creates the '
tree' section of a BEAST2 XML parameter file,
which is part of a '
without being indented,
when there is no tip-dating
no_taxa_to_xml_tree(inference_model, id = "deprecated")
a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.
an alignment's IDs.
An ID can be extracted from its FASTA filename
the random phylogeny as XML text
tree tag has these elements:
<tree[...]> <taxonset[...]> [...] </taxonset> </run>