Read a tip dates file

Read a tip dates file

Usage

read_tipdates_file(tipdates_filename)

Arguments

tipdates_filename

name of the file containing the tip dates. This file is assumed to have two columns, separated by a tab. The first column contains the taxa names, the second column contains the date.

Value

the tip dates as a tibble, with column names `taxon` and `time`. The `time` column creates strings instead of numbers, to allow using the literally same values from the tip dates file in the BEAST2 XML input file (i.e. avoid rounding errors)

Author

Richèl J.C. Bilderbeek

Examples

read_tipdates_file(get_beautier_path("babette_issue_109.tsv"))
#> # A tibble: 6 × 2
#>   taxon                  time            
#>   <chr>                  <chr>           
#> 1 MK388093.1:ACT/04-2013 2013.25         
#> 2 MK388094.1:SA/12-2013  2013.91666666667
#> 3 MK388095.1:ACT/04-2013 2013.25         
#> 4 MK388096.1:NSW/02-2013 2013.08333333333
#> 5 MK388097.1:SA/07-2012  2012.5          
#> 6 MK388098.1:ACT/04-2014 2014.25