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Creates the XML of a random phylogeny, as used in the init section

Source: R/rnd_phylo_xml_init.R
rnd_phylo_to_xml_init.Rd

Creates the XML text for the beast tag of a BEAST2 parameter file, which is directly after the XML declaration (created by create_xml_declaration.

Usage

rnd_phylo_to_xml_init(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

the phylogeny as XML text

Details

The init tag has these elements:


  <init id=\"RandomTree.t:[...]>
      <populationModel[...]>
      [...]
      </populationModel>
  </init>

Author

Richèl J.C. Bilderbeek