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Internal function

Source: R/taxa_to_xml_tree.R
taxa_to_xml_tree.Rd

Internal function to creates the 'tree' section of a BEAST2 XML parameter file, which is part of a 'state' section, without being indented.

Usage

taxa_to_xml_tree(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

lines of XML text

Details

The tree tag has these elements:


   <tree[...]>
       <taxonset[...]>
       [...]
       </taxonset>
    </run>

Author

Richèl J.C. Bilderbeek