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Helper function to retrieve species information from the ENSEMBL API

Source: R/get.ensembl.info.R
get.ensembl.info.Rd

This function interfaces with the ENSEMBL API (https://rest.ensembl.org/info/species?content-type=application/json) and internally stores the output to use this information for subsequent retrieval function calls.

Usage

get.ensembl.info(update = FALSE, division)

Arguments

update

logical, default FALSE. If TRUE, force re-download of info.

division

the ENSEMBL database (division) for which information shall be retrieved (available options can be obtained with ensembl_divisions).

See also

ensembl_divisions, getKingdomAssemblySummary, getENSEMBLInfo

Author

Hajk-Georg Drost

Examples

if (FALSE) {
# Look at available ENSEMBL division options
ensembl_divisions()
# Retrieve available information for EnsemblVertebrates
example <- get.ensembl.info(division = "EnsemblVertebrates")
example
# Update information file stored in the tempdir() folder.
example_update <- get.ensembl.info(division = "EnsemblVertebrates", update = TRUE)
example_update
}