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Retrieve the assembly_summary.txt file from NCBI genbank metagenomes

Source: R/getMetaGenomeSummary.R
getMetaGenomeSummary.Rd

Retrieval function of the assembly_summary.txt file from NCBI genbank metagenomes. This files stores all available metagenome projects on NCBI Genbank.

Usage

getMetaGenomeSummary(
  local_file = file.path(cachedir(), "assembly_summary_metagenomes_genbank.txt")
)

Arguments

local_file

where to store this backend file, default: file.path(cachedir(), "assembly_summary_metagenomes_genbank.txt")

See also

getKingdomAssemblySummary, getSummaryFile

Author

Hajk-Georg Drost

Examples

if (FALSE) { # \dontrun{
meta.summary <- getMetaGenomeSummary()
meta.summary
} # }