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Import Genome Assembly Stats File

Source: R/read_assemblystats.R
read_assemblystats.Rd

This function reads an organism specific Genome Assembly Stats file that was retrieved with getAssemblyStats.

Usage

read_assemblystats(file, type = "raw", organism = NULL)

Arguments

file

a character string specifying the path to the file storing the Genome Assembly Stats file.

type

a tibble object, either type = "raw" to import the entire genome assembly stats file or type = "stats" to import overall statistics including all chromosomes, mitochondria and plastids.

organism

character, if not NULL, appends a column left side called 'species' with this value.

Details

This function takes a string specifying the path to the Genome Assembly Stats file of interest (e.g. the path returned by getAssemblyStats) and imports it.

See also

getAssemblyStats, read_genome, read_proteome, read_cds, read_gff

Author

Hajk-Georg Drost