Package index • bold

All functions

b_sepFasta(): Separate sequences (fasta) from bold_seqspec output.

bold-package bold: bold

bold_filter(): Filter BOLD specimen + sequence data (output of bold_seqspec)

bold_get_attr() bold_get_errors() bold_get_params(): Get the error messages and parameters used for a request from a bold output.

bold_identify(): Search for matches to sequences against the BOLD COI database.

bold_identify_taxonomy(): Add taxonomic parent names to a data set containing the process IDs of identified sequences.

bold_seq(): Search BOLD for sequences.

bold_seqspec(): Get BOLD specimen + sequence data.

bold_specimens(): Search BOLD for specimens.

bold_stats(): Get BOLD stats

bold_tax_id2(): Search BOLD for taxonomy data by BOLD ID.

bold_tax_name(): Search BOLD for taxonomy data by taxonomic name

bold_trace() print(<boldtrace>) read_trace() bold_read_trace(): Get BOLD trace files

sequences: List of 3 nucleotide sequences to use in examples for the bold_identify function