SequenceProvider

genetic sequence generator

Super class

charlatan::BareProvider -> SequenceProvider

Methods

Public methods

• SequenceProvider$render()

• SequenceProvider$clone()

Inherited methods

• charlatan::BareProvider$bothify()
• charlatan::BareProvider$lexify()
• charlatan::BareProvider$numerify()
• charlatan::BareProvider$print()
• charlatan::BareProvider$random_digit()
• charlatan::BareProvider$random_digit_not_zero()
• charlatan::BareProvider$random_digit_not_zero_or_empty()
• charlatan::BareProvider$random_digit_or_empty()
• charlatan::BareProvider$random_element()
• charlatan::BareProvider$random_element_prob()
• charlatan::BareProvider$random_int()
• charlatan::BareProvider$random_letter()
• charlatan::BareProvider$randomize_nb_elements()

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Method render()

Make a sequence

Usage

SequenceProvider$render(length = 30)

Arguments

length

(integer) length of sequence to create. default: 30

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Method clone()

The objects of this class are cloneable with this method.

Usage

SequenceProvider$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

z <- SequenceProvider$new()
z$render()
#> [1] "TAATCCTGNCTAGAATCGNNACTNTAACCN"
z$render(10)
#> [1] "NGTGGCACCA"
z$render(100)
#> [1] "TGTAANTCTANCGTGANGGCGTTNGGNTGGCNNAGTGANATTTCTCGAATGGCGTTNGANNNGNCAGTCNNNTTGNNNNAGANTGATATTCACNTATAAC"
# or even z$render(500)