Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
Source:R/cett_polypeptide_general_infromation_parsers.R
cett_poly_doc.RdExtract descriptions of identified polypeptide targets, enzymes, carriers, or transporters.
Usage
carriers_polypeptides()
enzymes_polypeptides()
targets_polypeptides()
transporters_polypeptides()Value
a tibble with 20 variables:
- id
- source
Specifies whether the identified polypeptide ID is associated with any of the following UniProt knowledge bases: Swiss-Prot, which is manually annotated and reviewed, or TrEMBL, which is automatically annotated and not reviewed.
- name
- general_function
General summary of the physiological function of the polypeptide
- specific_function
A more specific description of the polypeptide’s physiological function within the cell.
- gene_name
The short name commonly associated with the associated gene. Eg. PTGS1.
- locus
The specific chromosomal location or position of the gene’s sequence on a chromosome.
- cellular_location
The cellular location of the polypeptide.
- transmembrane_regions
Areas of the polypeptide sequence that span a biological membrane.
- signal_regions
Location of any signal peptides within the polypeptide sequence.
- theoretical_pi
Theoretical isoelectric point.
- molecular_weight
The molecular weight of the polypeptide.
- chromosome_location
The chromosomal location of the polypeptide gene
- organism
The organism in which this polypeptide functions.
- organism_ncbi_taxonomy_id
- amino_acid_sequence
The amino acid sequence of the polypeptide
- amino_acid_format
- gene_sequence
The sequence of the associated gene.
- gene_format
- parent_key
carrier/ target/ enzyme/ transporter id