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Parse Avantes converted file

Source: R/parse_avantes_converted.R
lr_parse_ttt.Rd

Parse Avantes converted file. https://www.avantes.com/products/spectrometers/

Usage

lr_parse_ttt(filename)

lr_parse_trt(filename)

Arguments

filename

Path of the file to parse

Value

A named list of two elements:

  • data: a dataframe with columns "wl", "dark", "white", "scope" and "processed", in this order.

  • metadata: a character vector with metadata including:

    • user: Name of the spectrometer operator

    • datetime: Timestamp of the recording in format '%Y-%m-%d %H:%M:%S' and UTC timezone. If timezone is missing in source file, UTC time will be assumed (for reproducibility purposes across computers with different localtimes).

    • spec_model: Model of the spectrometer

    • spec_ID: Unique ID of the spectrometer

    • white_inttime: Integration time of the white reference (in ms)

    • dark_inttime: Integration time of the dark reference (in ms)

    • sample_inttime: Integration time of the sample (in ms)

    • white_avgs: Number of averaged measurements for the white reference

    • dark_avgs: Number of averaged measurements for the dark reference

    • sample_avgs: Number of averaged measurements for the sample

    • white_boxcar: Boxcar width for the white reference

    • dark_boxcar: Boxcar width for the dark reference

    • sample_boxcar: Boxcar width for the sample reference

Details

'processed' column computed by official software and provided as is.

Examples

res_ttt <- lr_parse_ttt(
  system.file("testdata", "avantes_export.ttt", package = "lightr")
)
head(res_ttt$data)
#>    wl dark white scope processed
#> 1 300   NA    NA    NA    3.1487
#> 2 301   NA    NA    NA    3.1589
#> 3 302   NA    NA    NA    3.5700
#> 4 303   NA    NA    NA    3.9215
#> 5 304   NA    NA    NA    3.4034
#> 6 305   NA    NA    NA    3.7878
res_ttt$metadata
#>  [1] NA          NA          NA          "0804016U1" "100.00"    "100.00"   
#>  [7] "100.00"    "20"        "20"        "20"        "0"         "0"        
#> [13] "0"        

res_trt <- lr_parse_trt(
  system.file("testdata", "avantes_export2.trt", package = "lightr")
)
head(res_trt$data)
#>       wl dark white  scope processed
#> 1 275.27   NA    NA 805.00        NA
#> 2 275.87   NA    NA 816.34        NA
#> 3 276.47   NA    NA 817.11        NA
#> 4 277.07   NA    NA 812.41        NA
#> 5 277.66   NA    NA 814.31        NA
#> 6 278.26   NA    NA 817.64        NA
res_trt$metadata
#>  [1] NA          NA          NA          "1305084U1" "95.00"     "95.00"    
#>  [7] "95.00"     "20"        "20"        "20"        "1"         "1"        
#> [13] "1"