Extracts taxa from download objects and returns them in a useful format.
Usage
taxa(obj, ...)
# S3 method for class 'download'
taxa(obj, ...)
# S3 method for class 'download_list'
taxa(obj, collapse = TRUE, hierarchy = FALSE, ...)
Arguments
- obj
an R object from which counts are to be extracted.
- ...
arguments passed to other methods.
- collapse
should the results be returned as a list, one for each site (FALSE), or a single dataframe of all taxa? Default is TRUE
- hierarchy
Should the taxonomic hierarchy be included?
Value
Either a data frame of taxa or a list of such objects.
Details
Methods are available for "download" and "download_list" objects.
Examples
if (FALSE) { # \dontrun{
ostracodes <- get_dataset(datasettype = 'ostracode')
ostro.dl <- get_download(ostracodes)
ostro.taxa <- taxa(ostro.dl)
} # }
