All functions

Stratiplot(<download>)

Palaeoecological stratigraphic diagrams

Stratiplot(<download_list>)

Palaeoecological stratigraphic diagrams

ages()

Access proxy age data

bind()

Function to bind objects together into a longer object.

browse()

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<dataset>)

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<dataset_list>)

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<default>)

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<download>)

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<download_list>)

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

compile_downloads()

Compile download objects

compile_taxa()

Function to convert assemblage taxa to standardized lists.

counts()

Access proxy count data

depths()

Extracts the depth values from a `download` object

download

A class for download objects.

get_chroncontrol()

Function to return chronological control tables used to build age models.

get_chroncontrol(<dataset>)

Function to return chronological control tables from a dataset.

get_chroncontrol(<dataset_list>)

Function to return chronological control tables from a dataset_list.

get_chroncontrol(<default>)

Function to return chronological control tables from a chronologic ID.

get_chroncontrol(<download>)

Function to return chronological control tables from a download object.

get_chroncontrol(<download_list>)

Function to return chronological control tables from a download_list object.

get_closest()

Find the closest dataset records to a site, dataset or long/lat pair in Neotoma

get_contact()

Get contact information.

get_dataset()

Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_dataset(<default>)

Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_dataset(<download>)

Obtain dataset information from an existing download object.

get_dataset(<download_list>)

Obtain dataset information from a download_list.

get_dataset(<geochronologic>)

Obtain dataset information from an object of class geochronologic.

get_dataset(<geochronologic_list>)

Obtain dataset information from an object of class geochronologic_list.

get_dataset(<integer>)

Obtain dataset information from a vector of dataset IDs.

get_dataset(<numeric>)

Obtain dataset information from a vector of dataset IDs.

get_dataset(<site>)

Obtain dataset information from an existing site object.

get_download()

Function to return full download records using sites, datasets, or dataset IDs.

get_download(<dataset>)

Function to return full download records using a dataset.

get_download(<dataset_list>)

Function to return full download records using a dataset_list.

get_download(<default>)

Function to return full download records using numeric dataset IDs.

get_download(<site>)

Function to return full download records using a site.

get_geochron()

Function to return geochronological data from records.

get_publication()

A function to get publications for sites or datasets in the Neotoma Database using the API.

get_publication(<dataset>)

A function to get publications for datasets in the Neotoma Database using the API.

get_publication(<dataset_list>)

A function to get publications for dataset_lists in the Neotoma Database using the API.

get_publication(<default>)

A function to get publications for sites or datasets in the Neotoma Database using the API.

get_publication(<download>)

A function to get publications for downloads in the Neotoma Database using the API.

get_publication(<download_list>)

A function to get publications for datasets in the Neotoma Database using the API.

get_site()

Return Site Information.

get_site(<dataset>)

Return Site Information from a numeric list of site ids.

get_site(<dataset_list>)

Return Site Information from a dataset_list

get_site(<default>)

Return Site Information.

get_site(<download>)

Return Site Information from a download

get_site(<download_list>)

Return Site Information from a download_list

get_site(<geochronologic>)

Return Site Information from a geochronologic

get_site(<geochronologic_list>)

Return Site Information from a geochronologic_list

get_site(<integer>)

Return Site Information from a vector of integers.

get_site(<numeric>)

Return Site information from a vector of numeric elements.

get_table()

Get Neotoma value tables.

get_taxa()

Get taxon information from Neotoma.

gp.table

A list of all the geopolitical entities in the Neotoma database.

plot_leaflet()

Leaflet plots for neotoma data.

pollen.equiv

A table to convert the pollen taxa identified by investigators to standardized lists.

read.tilia()

Read proxy data from Tilia TLX files

read_bacon()

Function to read in defined Bacon outputs.

taxa()

Access proxy taxonomic data

taxon.list

Neotoma taxon list

write_agefile()

Write age control file to disk formatted for either Bacon or Clam