Function reference • neotoma

All functions

Stratiplot(<download>): Palaeoecological stratigraphic diagrams

Stratiplot(<download_list>): Palaeoecological stratigraphic diagrams

ages(): Access proxy age data

bind(): Function to bind objects together into a longer object.

browse(): Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<dataset>): Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<dataset_list>): Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<default>): Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<download>): Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse(<download_list>): Open a browser window to display a Neotoma dataset within the Neotoma Explorer

compile_downloads(): Compile download objects

compile_taxa(): Function to convert assemblage taxa to standardized lists.

counts(): Access proxy count data

depths(): Extracts the depth values from a `download` object

download: A class for download objects.

get_chroncontrol(): Function to return chronological control tables used to build age models.

get_chroncontrol(<dataset>): Function to return chronological control tables from a dataset.

get_chroncontrol(<dataset_list>): Function to return chronological control tables from a dataset_list.

get_chroncontrol(<default>): Function to return chronological control tables from a chronologic ID.

get_chroncontrol(<download>): Function to return chronological control tables from a download object.

get_chroncontrol(<download_list>): Function to return chronological control tables from a download_list object.

get_closest(): Find the closest dataset records to a site, dataset or long/lat pair in Neotoma

get_contact(): Get contact information.

get_dataset(): Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_dataset(<default>): Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_dataset(<download>): Obtain dataset information from an existing download object.

get_dataset(<download_list>): Obtain dataset information from a download_list.

get_dataset(<geochronologic>): Obtain dataset information from an object of class geochronologic.

get_dataset(<geochronologic_list>): Obtain dataset information from an object of class geochronologic_list.

get_dataset(<integer>): Obtain dataset information from a vector of dataset IDs.

get_dataset(<numeric>): Obtain dataset information from a vector of dataset IDs.

get_dataset(<site>): Obtain dataset information from an existing site object.

get_download(): Function to return full download records using sites, datasets, or dataset IDs.

get_download(<dataset>): Function to return full download records using a dataset.

get_download(<dataset_list>): Function to return full download records using a dataset_list.

get_download(<default>): Function to return full download records using numeric dataset IDs.

get_download(<site>): Function to return full download records using a site.

get_geochron(): Function to return geochronological data from records.

get_publication(): A function to get publications for sites or datasets in the Neotoma Database using the API.

get_publication(<dataset>): A function to get publications for datasets in the Neotoma Database using the API.

get_publication(<dataset_list>): A function to get publications for dataset_lists in the Neotoma Database using the API.

get_publication(<default>): A function to get publications for sites or datasets in the Neotoma Database using the API.

get_publication(<download>): A function to get publications for downloads in the Neotoma Database using the API.

get_publication(<download_list>): A function to get publications for datasets in the Neotoma Database using the API.

get_site(): Return Site Information.

get_site(<dataset>): Return Site Information from a numeric list of site ids.

get_site(<dataset_list>): Return Site Information from a dataset_list

get_site(<default>): Return Site Information.

get_site(<download>): Return Site Information from a download

get_site(<download_list>): Return Site Information from a download_list

get_site(<geochronologic>): Return Site Information from a geochronologic

get_site(<geochronologic_list>): Return Site Information from a geochronologic_list

get_site(<integer>): Return Site Information from a vector of integers.

get_site(<numeric>): Return Site information from a vector of numeric elements.

get_table(): Get Neotoma value tables.

get_taxa(): Get taxon information from Neotoma.

gp.table: A list of all the geopolitical entities in the Neotoma database.

plot_leaflet(): Leaflet plots for neotoma data.

pollen.equiv: A table to convert the pollen taxa identified by investigators to standardized lists.

read.tilia(): Read proxy data from Tilia TLX files

read_bacon(): Function to read in defined Bacon outputs.

taxa(): Access proxy taxonomic data

taxon.list: Neotoma taxon list

write_agefile(): Write age control file to disk formatted for either Bacon or Clam