The object stored here should be exactly the same as the object returned
retrieve_onekp(). It is stored here for convenience and to save
time in examples (
retrieve_onekp takes around 30 seconds to run).
The 1000 Plants Initiative (www.onekp.com) has sequenced the transcriptomes of over 1000 plant species. This package allows these sequences and metadata to be retrieved and filtered by code, species or recursively by clade. Scientific names and NCBI taxonomy IDs are both supported.
retrieve_onekp - retrieve all 1KP metadata
filter_by_code - filter metadata by 1KP code
filter_by_clade - filter metadata by clade
filter_by_species - filter metadata by species
download_peptides - get protein sequences linked to metadata
download_nucleotides - get DNA sequences linked to metadata
Zebulun Arendsee <email: [email protected]>
Any bugs or issues can be reported at <https://github.com/ropensci/onekp/issues>