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Map the fossil records

Source: R/pbdb_geographic_functions.R
pbdb_map.Rd

The function opens a new window with a map showing the distribution of the fossil records as points. These points are coloured according to the number of occurrences per cell.

Usage

pbdb_map(
  data,
  col_int = "white",
  pch = 19,
  col_ocean = "black",
  main = NULL,
  col_point = c("light blue", "blue"),
  do_plot = TRUE,
  ...
)

Arguments

data

Input data frame. This data frame is the output of the pbdb_occurrences() function using the argument show = "coords". See also Details and Examples.

col_int

The colour of the mainland.

pch

See par().

col_ocean

The colour of the ocean.

main

Title of the map. See par().

col_point

Two or more colours that are used to generate the colour gradient showing the number of occurrences per coordinate in the map.

do_plot

Logical. If TRUE, the function produces a plot in addition to returning a data frame with the occurrence counts.

...

Other parameters. See par() and map().

Value

A data frame with the number of occurrences per coordinate.

Details

The argument show = "coords" in the pbdb_occurrences() function is required. We recommend the use of a cairo device (X11()) for better visualization of the maps. See Examples.

See also

See pbdb_occurrences(), map(), par() and colors() help pages.

Examples

if (FALSE) { # \dontrun{
  data <- pbdb_occurrences(
    limit = "all", vocab = "pbdb", base_name = "Canis", show = "coords"
  )
  X11(width = 12, height = 8)
  pbdb_map(data)
  pbdb_map(data, pch = 1)
  pbdb_map(
    data,
    pch = 19,
    col_point = c("pink", "red"),
    col_ocean = "light blue",
    main = "Canis"
  )
} # }