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Use case: working with spatial R packages

One may find themselves having to clean up messy coordinates as part of their project/work/etc. How does this look when fit into a workflow going all the way to visualization?

Let’s say you have the following messy coordinates that you’ve compiled from different places, leading to a variety of messy formats:

lats <- c(
  "46.4183",
  "46.4383° N",
  "46.5683° N",
  "46° 27´ 5.4\" N",
  "46° 25.56’",
  "N46°24’4.333"
)
lons <- c(
  "25.7391",
  "E25°34’6.4533",
  "25.3391° E",
  "25.8391° E",
  "25° 35.56’",
  "E25°34’4.333"
)

Parse messy coordinates

dat <- tibble::tibble(
  longitude = parse_lon(lons),
  latitude = parse_lat(lats)
)
dat

Combine coordinates with other data

dat$shape <- c("round", "square", "triangle", "round", "square", "square")
dat$color <- c("blue", "yellow", "green", "red", "green", "yellow")
dat

Coerce to an sf object

datsf <- sf::st_as_sf(dat, coords = c("longitude", "latitude"))
datsf

Calculate the center of the plot view

center_lon <- mean(dat$longitude)
center_lat <- mean(dat$latitude)

Plot data using the leaflet package

if (!requireNamespace("leaflet")) install.packages("leaflet")
library("leaflet")
leaflet() %>%
  addTiles() %>%
  addMarkers(data = datsf) %>%
  setView(center_lon, center_lat, zoom = 10)

We’d like to have data only for a certain area, e.g., a political boundary or a park boundary. We can clip the data to a bounding box using sf::st_crop().

First, define the bounding box, and visualize

bbox <- c(
  xmin = 25.42813, ymin = 46.39455,
  xmax = 25.68769, ymax = 46.60346
)
leaflet() %>%
  addTiles() %>%
  addRectangles(bbox[["xmin"]], bbox[["ymin"]], bbox[["xmax"]], bbox[["ymax"]]) %>%
  setView(center_lon, center_lat, zoom = 10)

Crop the data to the bounding box

datsf_c <- st_crop(datsf, bbox)

Plot the new data

leaflet() %>%
  addTiles() %>%
  addMarkers(data = datsf_c) %>%
  setView(center_lon, center_lat, zoom = 10)