Returns the evolutationary distinctness of ids using the fair proportion metric.
Usage
calcPrtFrPrp(tree, tids, ignr = NULL, progress = "none")
Arguments
- tree
TreeMan object
- tids
tip IDs
- ignr
tips to ignore in calculation
- progress
name of the progress bar to use, see create_progress_bar
Details
Extension of calcFrPrp() but with ignore argument.
Use ignr to ignore certain tips from calculation. For example, if any of tips
are extinct you may wish to ignore these.
References
Isaac, N.J.B., Turvey, S.T., Collen, B., Waterman, C. and Baillie, J.E.M. (2007).
Mammals on the EDGE: conservation priorities based on threat and phylogeny. PLoS ONE, 2, e296.
Examples
tree <- randTree(10)
calcPrtFrPrp(tree, c("t1", "t3"), ignr = "t2")
#> t1 t3
#> 1.2664055 0.7229127
