Calculate evolutionary distinctness for part of tree

Returns the evolutationary distinctness of ids using the fair proportion metric.

Usage

calcPrtFrPrp(tree, tids, ignr = NULL, progress = "none")

Arguments

tree

TreeMan object

tids

tip IDs

ignr

tips to ignore in calculation

progress

name of the progress bar to use, see create_progress_bar

Details

Extension of calcFrPrp() but with ignore argument. Use ignr to ignore certain tips from calculation. For example, if any of tips are extinct you may wish to ignore these.

References

Isaac, N.J.B., Turvey, S.T., Collen, B., Waterman, C. and Baillie, J.E.M. (2007). Mammals on the EDGE: conservation priorities based on threat and phylogeny. PLoS ONE, 2, e296.

See also

calcFrPrp https://github.com/DomBennett/treeman/wiki/calc-methods

Examples

tree <- randTree(10)
calcPrtFrPrp(tree, c("t1", "t3"), ignr = "t2")
#>        t1        t3 
#> 1.2664055 0.7229127