Skip to contents

Get phylogenetic diversities of nodes

Source: R/a.R
getNdsPD.Rd

Return summed value of all descending spns

Usage

getNdsPD(tree, ids, parallel = FALSE, progress = "none")

Arguments

tree

TreeMan object

ids

vector of node ids

parallel

logical, make parallel?

progress

name of the progress bar to use, see create_progress_bar

Details

Sums the lengths of all descending branches from a node.

See also

getNdPD, https://github.com/DomBennett/treeman/wiki/get-methods

Examples


tree <- randTree(10)
getNdsPD(tree, ids = tree["all"]) # return PD of all ids
#>        n1        n2        n3        n4        n5        n6        n7        n8 
#> 11.107549 10.043449  8.850029  7.977889  6.953430  2.301880  2.916683  1.121731 
#>        n9        t1        t2        t3        t4        t5        t6        t7 
#>  1.525615  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
#>        t8        t9       t10 
#>  0.000000  0.000000  0.000000