Get a node slot for multiple nodes — getNdsSlt • phylotaR

Returns the values of named slot as a vector for atomic values, else list.

Usage

getNdsSlt(tree, slt_nm, ids, parallel = FALSE, progress = "none")

Arguments

tree: TreeMan object
slt_nm: slot name
ids: vector of node ids
parallel: logical, make parallel?
progress: name of the progress bar to use, see create_progress_bar

Details

Returned object depends on name, either character, vector or numeric. Parallelizable. Default node slots are: id, spn, prid, ptid and txnym.

See also

getNdSlt, https://github.com/DomBennett/treeman/wiki/get-methods

Examples


tree <- randTree(10)
getNdsSlt(tree, slt_nm = "spn", ids = tree["tips"]) # return spans of all tips
#>           t1          t10           t2           t3           t4           t5 
#> 0.5081212099 0.6583406578 0.0002173744 0.4607886851 0.4825757614 0.7221059527 
#>           t6           t7           t8           t9 
#> 0.6016585629 0.3351444209 0.4105077630 0.7371745745