Returns a tree with a node ID(s) removed
Usage
rmNodes(tree, nids, progress = "none")
Arguments
- tree
TreeMan object
- nids
internal node IDs
- progress
name of the progress bar to use, see create_progress_bar
Details
Removes nodes in a tree. Joins the nodes following to
the nodes preceding the node to be removed. Creates polytomies.
Warning: do not use this function to remove tip nodes, this create a
corrupted tree.
Examples
tree <- randTree(10)
tree <- rmNodes(tree, "n3")
summary(tree) # tree is now polytmous
#> Tree (TreeMan Object):
#> + 10 tips
#> + 8 internal nodes
#> + Polytomous
#> + PD 10.2
#> + Root node is "n1"
