Print sim_results Object
Usage
# S3 method for class 'sim_results'
print(x, ...)Arguments
- x
sim_resultsobject; returned by thesimfunction- ...
further arguments passed to or from other methods; none specified
Examples
library(terra)
n1_small <- rast(system.file("input_maps/n1_small.tif", package = "rangr"))
K_small <- rast(system.file("input_maps/K_small.tif", package = "rangr"))
sim_data <- initialise(
n1_map = n1_small,
K_map = K_small,
r = log(2),
rate = 1 / 1e3
)
sim_res <- sim(obj = sim_data, time = 20, burn = 5)
print(sim_res)
#> Class: sim_results
#>
#> N_map:
#> , , 1
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 0 0 0 0 0 0
#> [2,] NA NA NA 0 0 0 0 0 0 0
#> [3,] NA NA NA 0 0 0 0 0 0 0
#> [4,] NA NA NA 0 0 0 0 0 0 0
#> [5,] 0 0 0 0 0 0 0 0 0 0
#> [6,] 0 0 1 0 0 0 0 0 0 0
#> [7,] 0 0 0 0 0 0 0 0 0 0
#> [8,] 0 0 0 0 1 2 3 0 0 0
#> [9,] 0 0 0 0 0 0 0 0 1 2
#> [10,] 0 0 0 0 1 1 0 5 1 4
#> [11,] 0 0 0 0 3 1 0 3 3 4
#> [12,] 0 0 1 3 3 3 2 7 4 6
#> [13,] 0 0 2 3 2 1 8 5 5 7
#> [14,] 0 0 1 1 3 3 0 0 8 6
#> [15,] 0 0 3 4 2 3 5 4 5 4
#>
#> , , 2
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 0 0 0 0 0 0
#> [2,] NA NA NA 0 0 0 0 0 0 0
#> [3,] NA NA NA 0 0 0 0 0 0 0
#> [4,] NA NA NA 0 0 0 0 0 0 0
#> [5,] 0 0 0 0 0 0 0 0 0 0
#> [6,] 0 0 0 0 0 0 0 0 0 0
#> [7,] 0 0 1 0 0 2 2 0 0 0
#> [8,] 0 0 1 0 2 1 3 0 0 0
#> [9,] 0 0 0 3 1 1 0 0 2 3
#> [10,] 0 0 0 2 2 2 0 7 8 4
#> [11,] 0 1 1 4 4 6 0 6 9 5
#> [12,] 0 0 2 4 2 4 8 5 11 8
#> [13,] 0 0 2 1 6 19 5 7 6 5
#> [14,] 0 0 7 5 6 6 0 0 4 8
#> [15,] 0 0 2 6 3 6 6 6 4 2
#>
#> , , 3
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 0 0 0 0 0 0
#> [2,] NA NA NA 0 0 0 0 0 0 0
#> [3,] NA NA NA 0 0 0 0 0 0 0
#> [4,] NA NA NA 0 0 0 0 0 0 0
#> [5,] 0 0 0 0 2 0 0 0 0 0
#> [6,] 1 0 0 0 0 0 0 0 0 0
#> [7,] 0 0 1 0 0 4 3 0 0 0
#> [8,] 0 0 1 4 0 3 4 0 0 0
#> [9,] 0 0 2 4 5 3 0 0 4 7
#> [10,] 1 1 2 1 4 8 0 13 7 8
#> [11,] 0 2 1 2 2 7 0 9 8 7
#> [12,] 0 0 3 6 1 14 11 7 17 14
#> [13,] 0 0 5 8 5 14 11 8 9 10
#> [14,] 0 0 6 6 8 10 0 0 11 7
#> [15,] 0 7 2 6 9 3 8 7 6 6
#>
#> , , 4
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 0 0 0 0 0 0
#> [2,] NA NA NA 0 0 0 0 0 0 0
#> [3,] NA NA NA 0 0 0 0 0 0 0
#> [4,] NA NA NA 0 0 0 0 0 0 0
#> [5,] 0 0 0 0 1 0 0 0 0 0
#> [6,] 0 1 1 0 0 0 0 0 0 0
#> [7,] 0 1 2 0 0 9 4 0 0 0
#> [8,] 0 1 0 4 7 6 6 0 0 0
#> [9,] 0 4 3 2 3 4 0 0 11 4
#> [10,] 1 1 7 12 5 8 0 9 15 9
#> [11,] 1 3 5 6 17 9 0 12 10 15
#> [12,] 0 0 3 5 17 9 10 9 11 7
#> [13,] 0 0 6 10 12 11 11 13 14 10
#> [14,] 0 0 9 7 7 15 0 0 18 8
#> [15,] 0 5 12 8 9 7 7 11 10 11
#>
#> , , 5
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 0 0 0 0 0 0
#> [2,] NA NA NA 0 0 0 0 0 0 0
#> [3,] NA NA NA 0 0 0 0 0 0 0
#> [4,] NA NA NA 0 0 0 0 0 0 0
#> [5,] 0 1 0 1 1 0 0 0 0 0
#> [6,] 1 3 4 0 0 0 0 0 0 0
#> [7,] 2 0 1 0 0 8 5 0 0 0
#> [8,] 1 4 12 2 9 17 7 0 0 0
#> [9,] 7 4 5 10 10 19 0 0 9 12
#> [10,] 1 3 6 6 13 9 0 10 21 15
#> [11,] 3 6 15 9 10 9 0 14 20 11
#> [12,] 0 0 9 17 22 16 11 12 14 14
#> [13,] 0 0 10 15 16 11 18 14 15 14
#> [14,] 0 0 15 8 17 14 0 0 9 21
#> [15,] 0 5 4 14 13 18 12 13 13 9
#>
#> , , 6
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 0 0 0 0 0 0
#> [2,] NA NA NA 0 0 0 0 0 0 1
#> [3,] NA NA NA 0 0 0 1 0 0 0
#> [4,] NA NA NA 3 1 0 0 0 0 0
#> [5,] 4 2 4 1 3 0 0 0 0 0
#> [6,] 1 2 4 0 0 0 0 0 0 0
#> [7,] 3 7 10 0 0 9 7 0 0 0
#> [8,] 6 4 7 19 10 20 16 0 0 0
#> [9,] 2 7 14 10 11 11 0 0 27 10
#> [10,] 4 12 12 28 14 21 0 19 23 11
#> [11,] 8 7 12 15 22 11 0 26 16 13
#> [12,] 0 0 14 19 14 16 20 12 17 19
#> [13,] 0 0 14 15 34 18 21 19 21 15
#> [14,] 0 0 17 10 24 22 0 0 26 21
#> [15,] 0 12 9 13 20 17 26 12 22 16
#>
#> , , 7
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 0 0 0 0 0 2
#> [2,] NA NA NA 0 0 0 0 0 0 2
#> [3,] NA NA NA 6 0 0 2 0 0 0
#> [4,] NA NA NA 6 1 0 0 0 0 0
#> [5,] 3 6 4 7 7 0 0 0 0 0
#> [6,] 3 6 6 0 0 0 0 0 0 0
#> [7,] 3 8 7 0 0 20 15 0 0 0
#> [8,] 7 17 12 12 14 18 12 0 0 0
#> [9,] 9 7 21 13 20 20 0 0 23 13
#> [10,] 7 8 23 19 21 19 0 21 25 25
#> [11,] 5 11 15 22 22 21 0 23 24 17
#> [12,] 0 0 17 25 30 19 24 26 28 24
#> [13,] 0 0 13 16 25 25 19 20 17 21
#> [14,] 0 0 14 23 25 28 0 0 38 20
#> [15,] 0 7 16 26 24 23 16 16 26 16
#>
#> , , 8
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 2 1 2 3 2 1
#> [2,] NA NA NA 0 0 0 0 0 0 2
#> [3,] NA NA NA 5 0 0 1 0 0 0
#> [4,] NA NA NA 6 18 0 0 0 0 0
#> [5,] 5 7 7 6 5 0 0 0 0 0
#> [6,] 10 9 10 0 0 0 0 0 0 0
#> [7,] 16 9 11 0 0 22 24 0 0 0
#> [8,] 10 11 13 12 17 13 25 0 0 0
#> [9,] 9 24 17 18 25 16 0 0 23 20
#> [10,] 11 18 24 28 23 24 0 27 25 26
#> [11,] 5 17 23 26 31 23 0 23 31 23
#> [12,] 0 0 23 20 34 24 21 30 36 29
#> [13,] 0 0 29 25 20 30 42 24 28 20
#> [14,] 0 0 19 24 29 34 0 0 35 30
#> [15,] 0 17 10 23 33 23 20 23 26 17
#>
#> , , 9
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 3 6 1 3 0 1
#> [2,] NA NA NA 0 0 0 0 0 0 6
#> [3,] NA NA NA 8 0 0 7 0 0 0
#> [4,] NA NA NA 13 11 0 0 0 0 0
#> [5,] 12 8 7 9 19 0 0 0 0 0
#> [6,] 15 27 20 0 0 0 0 0 0 0
#> [7,] 8 16 12 0 0 19 19 0 0 0
#> [8,] 16 25 22 21 26 35 24 0 0 0
#> [9,] 11 26 22 24 21 25 0 0 26 31
#> [10,] 8 20 22 28 31 22 0 26 33 28
#> [11,] 19 18 34 30 47 29 0 37 31 32
#> [12,] 0 0 21 32 34 18 27 34 30 30
#> [13,] 0 0 24 32 32 38 32 31 37 24
#> [14,] 0 0 18 37 25 35 0 0 41 24
#> [15,] 0 17 24 27 37 27 18 21 36 22
#>
#> , , 10
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 4 7 8 5 4 3
#> [2,] NA NA NA 0 0 0 0 0 0 3
#> [3,] NA NA NA 9 0 0 11 0 0 0
#> [4,] NA NA NA 17 12 0 0 0 0 0
#> [5,] 15 24 29 21 18 0 0 0 0 0
#> [6,] 16 13 21 0 0 0 0 0 0 0
#> [7,] 18 17 25 0 0 31 23 0 0 0
#> [8,] 23 23 24 19 29 31 22 0 0 0
#> [9,] 19 19 37 33 25 37 0 0 21 25
#> [10,] 23 23 25 27 42 29 0 29 35 36
#> [11,] 13 23 31 40 40 29 0 22 39 28
#> [12,] 0 0 21 30 31 37 34 32 55 25
#> [13,] 0 0 36 45 24 35 36 47 38 32
#> [14,] 0 0 26 27 47 37 0 0 40 23
#> [15,] 0 15 36 30 40 36 36 21 31 34
#>
#> , , 11
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 13 8 14 7 8 5
#> [2,] NA NA NA 0 0 0 0 0 0 5
#> [3,] NA NA NA 20 0 0 15 0 0 0
#> [4,] NA NA NA 23 28 0 0 0 0 0
#> [5,] 8 17 19 17 24 0 0 0 0 0
#> [6,] 26 31 30 0 0 0 0 0 0 0
#> [7,] 16 29 12 0 0 34 33 0 0 0
#> [8,] 19 32 24 22 38 28 30 0 0 0
#> [9,] 16 27 40 21 48 37 0 0 23 26
#> [10,] 25 18 46 57 36 35 0 30 34 20
#> [11,] 14 27 30 45 42 43 0 28 39 29
#> [12,] 0 0 33 35 34 36 41 39 35 37
#> [13,] 0 0 44 37 40 39 48 39 42 30
#> [14,] 0 0 26 54 37 36 0 0 34 53
#> [15,] 0 26 26 30 34 39 27 38 24 23
#>
#> , , 12
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 10 21 19 13 11 7
#> [2,] NA NA NA 0 0 0 0 0 0 7
#> [3,] NA NA NA 12 0 0 26 0 0 0
#> [4,] NA NA NA 36 25 0 0 0 0 0
#> [5,] 22 16 31 25 29 0 0 0 0 0
#> [6,] 18 22 29 0 0 0 0 0 0 0
#> [7,] 18 17 51 0 0 36 34 0 0 0
#> [8,] 35 39 42 29 46 41 49 0 0 0
#> [9,] 31 36 42 34 35 52 0 0 20 28
#> [10,] 20 29 42 45 39 30 0 25 36 42
#> [11,] 24 26 39 31 41 38 0 44 33 30
#> [12,] 0 0 32 57 47 40 40 45 27 42
#> [13,] 0 0 38 40 38 49 44 58 39 39
#> [14,] 0 0 42 38 46 54 0 0 53 37
#> [15,] 0 18 28 45 43 37 29 20 34 31
#>
#> , , 13
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 23 25 21 15 25 8
#> [2,] NA NA NA 0 0 0 0 0 0 10
#> [3,] NA NA NA 24 0 0 33 0 0 0
#> [4,] NA NA NA 25 36 0 0 0 0 0
#> [5,] 20 39 27 18 31 0 0 0 0 0
#> [6,] 27 30 42 0 0 0 0 0 0 0
#> [7,] 22 31 26 0 0 35 39 0 0 0
#> [8,] 30 52 46 46 43 54 43 0 0 0
#> [9,] 26 38 44 37 34 35 0 0 23 24
#> [10,] 27 33 40 41 49 46 0 35 45 33
#> [11,] 22 35 31 42 61 51 0 36 43 37
#> [12,] 0 0 25 35 46 41 47 34 58 24
#> [13,] 0 0 52 60 44 48 60 42 50 57
#> [14,] 0 0 35 53 51 48 0 0 59 41
#> [15,] 0 21 28 34 47 44 33 33 43 31
#>
#> , , 14
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 25 31 27 23 23 17
#> [2,] NA NA NA 0 0 0 0 0 0 17
#> [3,] NA NA NA 24 0 0 43 0 0 0
#> [4,] NA NA NA 42 34 0 0 0 0 0
#> [5,] 24 32 32 44 29 0 0 0 0 0
#> [6,] 33 40 36 0 0 0 0 0 0 0
#> [7,] 37 41 39 0 0 51 29 0 0 0
#> [8,] 34 40 43 41 48 50 46 0 0 0
#> [9,] 32 56 54 38 60 46 0 0 37 18
#> [10,] 28 40 50 52 52 45 0 40 43 36
#> [11,] 17 31 43 51 45 53 0 56 41 37
#> [12,] 0 0 47 46 54 59 48 61 41 49
#> [13,] 0 0 36 56 57 46 51 57 55 46
#> [14,] 0 0 50 65 54 52 0 0 52 43
#> [15,] 0 20 26 33 51 40 44 39 50 37
#>
#> , , 15
#>
#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#> [1,] NA NA NA 0 36 44 29 28 25 26
#> [2,] NA NA NA 0 0 0 0 0 0 24
#> [3,] NA NA NA 29 0 0 51 0 0 0
#> [4,] NA NA NA 45 45 0 0 0 0 0
#> [5,] 26 33 32 46 30 0 0 0 0 0
#> [6,] 34 47 50 0 0 0 0 0 0 0
#> [7,] 34 43 53 0 0 51 39 0 0 0
#> [8,] 38 50 54 43 57 55 48 0 0 0
#> [9,] 35 48 48 59 45 52 0 0 32 33
#> [10,] 29 49 47 59 56 43 0 46 39 41
#> [11,] 15 47 33 44 59 53 0 42 68 43
#> [12,] 0 0 32 51 55 58 59 51 75 44
#> [13,] 0 0 48 60 42 56 44 56 47 42
#> [14,] 0 0 40 46 60 49 0 0 71 50
#> [15,] 0 19 33 45 51 40 39 44 44 38
#>
#>
#> simulated time steps 15
#> extinction FALSE