Skip to contents

Title

Source: R/ppo_traits.R
ppo_traits_sort.Rd

Title

Usage

ppo_traits_sort(x, flatten_traits = TRUE, flatten_all = FALSE)

Arguments

x

(object) A list or data.frame as returned from link(rppo)[ppo_traits] with sorted set to FALSE.

flatten_traits

(logical) Should the traits list be melted in a data.frame. Default : TRUE

flatten_all

(logical) Should the output list be melted in a data.frame. Default : FALSE

Value

A list for each event id containing a list with the following elements:

  • `metadata`: A data frame containing metadata

  • `taxonomy`: A data.frame containing the taxonomy

  • `traits`: if flatten_traits is TRUE, a melted data.frame, else a list containing the traits value

IF flatten_all is TRUE, the list is flatten to a data.frame

Examples

r1 <- ppo_data(genus = "Quercus", termID='obo:PPO_0002313', limit=10, timeLimit = 4)
#> sending request for data ...
#> https://biscicol.org/api/v3/download/_search?q=+genus:Quercus++AND+++termID:"obo:PPO_0002313"&limit=10
r1_traits <- ppo_traits(r1,  sorted = FALSE)
#> Warning: cannot open URL 'https://www.usanpn.org:443/npn_portal/observations/getObservationById.json?request_src=PPO&observation_id=2484719': HTTP status was '404 Not Found'
#> Error in open.connection(con, "rb"): cannot open the connection to 'http://www.usanpn.org/npn_portal/observations/getObservationById.json?request_src=PPO&observation_id=2484719'
r1_traits <- ppo_traits_sort(r1_traits)
#> Error: object 'r1_traits' not found