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Set and get taxon ID databases

Source: R/classification.R, R/getter_setter_s3_generics.R, R/taxon.R, and 2 more
tax_db.Rd

Set and get the taxon ID databases in objects that have them, such as taxon_id objects.

Usage

# S3 method for taxa_classification
tax_db(x)

# S3 method for taxa_classification
tax_db(x) <- value

tax_db(x)

tax_db(x) <- value

# S3 method for taxa_taxon
tax_db(x)

# S3 method for taxa_taxon
tax_db(x) <- value

# S3 method for taxa_taxon_id
tax_db(x)

# S3 method for taxa_taxon_id
tax_db(x) <- value

# S3 method for taxa_taxonomy
tax_db(x)

# S3 method for taxa_taxonomy
tax_db(x) <- value

Arguments

x

An object with taxon authority dates.

value

The taxon citations to set. Inputs will be coerced into a taxon_db vector.

Examples

x <- taxon_id(c('9606', '1386', '4890', '4345'), db = 'ncbi')
tax_db(x)
#> <taxon_db[4]>
#> [1] ncbi ncbi ncbi ncbi
tax_db(x) <- 'nbn'
tax_db(x)[2] <- 'itis'